Salipiger sp. CCB-MM3: AYJ57_09280
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Entry
AYJ57_09280 CDS
T04443
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yan
Salipiger sp. CCB-MM3
Pathway
yan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AYJ57_09280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yan03021
]
AYJ57_09280
03400 DNA repair and recombination proteins [BR:
yan03400
]
AYJ57_09280
Enzymes [BR:
yan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AYJ57_09280
Transcription machinery [BR:
yan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AYJ57_09280
DNA repair and recombination proteins [BR:
yan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AYJ57_09280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
ANT60534
LinkDB
All DBs
Position
1:1914010..1918263
Genome browser
AA seq
1417 aa
AA seq
DB search
MNQELTNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEDEFLDAQDQYGADAFS
ANIGAEAIREMLAAIDLEAEAEQLRADLKEATGELKPKKIIKRLKVVESFLESGNRPEWM
ILTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGSPIIVPSQDMILGLYYTTIMREGMKGEGMKFSNIEEVEHAL
TSGEVHLHAKIECRVKQIDEEGNEVVKRYETTPGRVRLGALLPMNAKAPFDLVNTLLRKK
DVQKVIDTVYRYCGQKESVIFCDQIMSMGFKEAFRAGISFGKDDMVIPDNKWELVEETRD
QVKDFEQQYLDGLITQGEKYNKVVDAWSKCNDKVTDAMMNTISANKRAEDGSEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRAHDCGTDRAITAEAAVNDGEVVASLAERILGRV
AADDIPHPVTGEVLVRAGQLIDERMADVIDEAAVQSTRIRSPLTCEAEEGVCAMCYGRDL
ARGTMVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFQEASQEGIIEFENAS
TLENSIGETLIMGRNMKLRIMGEDGKERASHKLGYGTKLFVKEGQKVARGDKLFEWDPYT
LPILAEADGVAKHVDLTNGVAVRDETDDATGMTQKIVIDWRAAPKGNELKPEIILMDADG
EPVRNAAGNPITYPMSVDAILSCEDGQEIKAGDVLARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIDPVDDTLEPKEYMIPKGKHIPVVEGDYVQ
KGDYIMDGNPAPHDILAIMGVEALANYMIDEVQDVYRLQGVKINDKHVEVIVRQMLQKWE
IHDSGDTTLLKGEHVDKAEFDAANEKIEKKGGRPATGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQRVRRIATERDNKVIEVRRD
EAEQAALLAAPEASAESDVIGGDEFDTLVVDTPESRE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacgaacaacccgttcaacccgctgaccccgccgaaggtcttcgac
gagatcaaagtgtcgctggcgtcgcccgagcggatcctctcgtggtcctacggcgagatc
aagaaacccgagacgatcaactaccgtacgttcaagcccgagcgtgacggcctgttctgc
gcgcgcatttttggcccgatcaaggactacgaatgcctgtgcggcaaatataagcgcatg
aagtatcgcggcgtcgtctgcgagaaatgcggcgtcgaagttaccctgcagaaagtgcgc
cgcgagcgcatgggccacatcgagctcgcagccccctgcgcgcacatctggttcctgaag
tcgctgccctcgcgcatcggcctcatgctggacatgacgctgcgtgacctcgagcgcgtg
ctgtacttcgaaaactacgtggtgatcgagcccggtctcaccgatctgacctacggccag
atgatgaccgaggacgagttcctcgacgcgcaggaccagtacggcgccgacgccttcagc
gccaacatcggtgccgaagcgatccgcgagatgctggccgccatcgacctcgaagccgag
gcagagcagctgcgcgccgacctcaaggaagcgaccggcgagctcaagcccaagaagatc
atcaagcgtctgaaggtggtggaatccttcctcgagtcgggcaaccgtcccgagtggatg
atcctcaccgtgatcccggtcatcccgcctgaactgcgcccgctggtgccgctggacggt
ggccgcttcgcgacctcggacctgaacgacctctaccgccgcgtgatcaaccggaacaac
cgcctcaagcggctgatcgaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgg
atgctgcaggaagccgtcgacgctctgttcgacaacggccgtcgtggccgcgtcatcacc
ggtgccaacaagcgcccgctgaagtcgctgtcggacatgctgaaaggtaagcagggccgc
ttccgtcagaaccttctgggtaagcgcgtcgacttctcgggccgttcggtcatcgtgacc
ggtccggaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttc
aagcccttcatctactcgcggctcgaggccaaaggtctgtcgagcaccgtgaagcaggcg
aagaaactggtcgagaaagagcgtcccgaggtgtgggacatcctcgacgaggtgatccgc
gagcacccggttctgctgaaccgtgcgccgacgctgcaccgtctgggcattcaggcgttc
gaaccccagctgatcgaaggcaaggccatccagctgcacccgctcgtctgctcggcgttc
aacgctgacttcgacggtgaccagatggccgttcacgtgccgctgtcgcttgaagcgcag
ctcgaggcacgcgtgctgatgatgtcgacgaacaacgttctgtcgccggcaaacggcagc
ccgatcatcgttccgtcgcaggatatgatccttggcctgtactacaccaccatcatgcgc
gaaggcatgaagggcgagggcatgaagttctcgaacatcgaagaggtggagcacgctctg
acctccggtgaggtgcatctgcacgccaagatcgaatgccgcgtcaagcagatcgacgaa
gagggcaatgaggtcgtcaaacgctacgagacgaccccgggccgcgtgcgcctcggcgcg
ctgctgccgatgaacgccaaggctccgttcgatctggtcaacacgctgctgcgtaagaaa
gacgtgcagaaggtcatcgacaccgtctaccgctactgcggtcagaaagagtcggtcatc
ttctgtgaccagatcatgtcgatgggcttcaaagaagcgttccgcgccggcatctcgttc
ggcaaggacgacatggtcatccccgacaacaagtgggaactggtcgaggaaacccgcgat
caggtgaaggacttcgagcagcagtatctcgacggtctgatcacccagggcgagaagtac
aacaaggtggtggacgcctggtcgaagtgtaacgacaaggtcaccgacgccatgatgaac
accatctcggccaacaagcgcgccgaggacgggtcggaaatggagccgaactcggtttac
atgatggcccactccggtgcgcgtggctcggtcacccagatgaagcagctgggcgggatg
cgcgggctgatggcgaagccgaacggcgacatcatcgagaccccgattatctcgaacttc
aaagaaggcctgaccgttctcgagtacttcaactcgacccacggtgcccgtaagggtctg
tcggataccgctctgaagacggcaaactcgggttacctgacccgtcgtctggtggacgtg
gcgcaggactgcatcgtgcgtgcgcacgactgtggcaccgaccgcgcgatcaccgcagaa
gcggctgtcaacgatggtgaggttgtcgcctcgctcgcagagcgtatcctcggccgtgtg
gctgcggatgacatcccgcaccccgttaccggcgaagtgctggtgcgtgccggtcagctc
atcgacgagcgtatggccgacgtgatcgacgaggcggccgtgcagtccacgcgcatccgc
tcgccgctgacctgtgaggccgaagagggcgtctgcgccatgtgctatggccgtgacctc
gcacgcggcaccatggtcaacaccggcgaagctgtcggcatcatcgccgcgcagtcgatc
ggtgagcctggcacgcagctgacgatgcggaccttccacatcggcggcgttgctcagggt
ggccagcagtccttccaggaagcttcgcaggaaggcatcatcgagttcgagaacgcctcg
accctcgagaactccatcggcgagacgctcatcatgggccgcaacatgaagctgcggatc
atgggtgaggacggcaaggaacgtgcgagccacaagctcggctacggcaccaagctgttc
gtcaaggaaggccagaaggtcgctcgcggcgacaagctgttcgagtgggacccctacacc
ctgccgatcctggcggaggccgacggtgtcgccaagcatgtggacctcaccaatggtgtg
gccgtgcgcgacgagaccgacgatgccaccggcatgacccagaagatcgtgatcgactgg
cgtgcggcaccgaagggcaacgagctcaagccggaaatcatcctgatggatgccgatggc
gagcccgtccgcaacgcggctggcaacccgatcacctacccgatgtcggtcgacgcgatc
ctgtcgtgcgaagacgggcaggagatcaaggccggtgacgttctggcgcgtatcccgcgt
gaaggcgcgaagacgaaggacattaccggtggtctgccgcgtgtggccgaactcttcgaa
gcgcgtcgtccgaaggaccacgccatcatcgccgaaatcgacggctatgtgcgctttggc
aaggactacaagaacaagcgccgcatcgcgattgacccggtcgacgacacgctggagccc
aaggaatacatgatccccaagggcaagcacattccggtggtcgagggcgattacgtccag
aagggcgactacatcatggacggcaacccggcgccgcatgacatcctggccatcatgggt
gtcgaggctctggcgaactacatgatcgacgaagtccaggacgtctatcgactgcagggc
gtgaagatcaacgacaagcacgtcgaggtcatcgtccgtcagatgctgcagaagtgggaa
atccacgactccggcgacaccacgctgctcaaaggcgagcatgtggacaaggcggagttc
gacgcggccaacgagaagatcgagaagaagggcggccgtccggcgacgggcgagcccatc
ctgctcggcatcaccaaagcgtcgctgcagacccgttcgttcatctcggcggcctccttc
caggagaccacccgcgtcctcaccgaggcttcggtgcagggcaagaaggacaagctggtc
ggcctcaaggaaaacgtcatcgtgggccgcctgatcccggcgggcaccggtggcgcgacc
cagcgggtgcgtcgcatcgcgaccgagcgcgacaacaaggtgatcgaagtgcgccgcgac
gaggccgaacaggccgcgctgctggccgcgcccgaagcctcggcggagagcgacgtgatc
ggtggcgacgagttcgacacgctggtcgtggacacgccggaaagccgcgagtaa
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