Salipiger sp. CCB-MM3: AYJ57_15195
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Entry
AYJ57_15195 CDS
T04443
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
yan
Salipiger sp. CCB-MM3
Pathway
yan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYJ57_15195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yan03019
]
AYJ57_15195
03400 DNA repair and recombination proteins [BR:
yan03400
]
AYJ57_15195
Enzymes [BR:
yan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYJ57_15195
Messenger RNA biogenesis [BR:
yan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYJ57_15195
DNA repair and recombination proteins [BR:
yan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYJ57_15195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
Viral_helicase1
AAA_11
Cas3-like_C_2
ABC_tran_CTD
Motif
Other DBs
NCBI-ProteinID:
ANT61813
UniProt:
A0A1B1PTB9
LinkDB
All DBs
Position
2:273243..278765
Genome browser
AA seq
1840 aa
AA seq
DB search
MSVFNKAFVPKKPKPLTALSRRREPRNFADFLKLATSFDLEMKGRAGSPLTLRDAAAIPA
VSALKDIETSRRGMSARDVVKELRRRRLAIGHNAARFDIPELESLAGTTLSDIPLVDTLW
LSPLAFPANDTHRLEKPYLEKDKVLPDPEEDARNSVLLLRDEVERLRAMDRDWLEILCWL
CCLGPASLGYEFLFEVIFESIEPLPSAPLEAARVVVPKIRAIFGDTLCLHGLHDQVLMAF
KSGNGWPLAWALSWHRHKVERAAPARWLLETFPEFQLALDDLGRRRCSHRSCIRCRDHGT
PLESMAHWFPPAPGQILAFQPPFDLGYLTYQEQVMRAALARRDTLGILPTGTGKSRCFQV
PALEQHARTGDLAVVISPLKALMEDQIKKAKSENLPGVDRLHGDLDAVECERVFDAVRSG
HTALLYISPEGLGGAAMRKLLESRRIGMWVFDEVHCVPTWGKGFRGDYWRAVSWARDCGA
KGSDRATILCLTATARPETRKDIQTVFSQRLGRRLQVIDGGADRPNLTYRVLEREGELDD
QIDRLLRDPQLLPGNGQAIIYAYRQKDTLEIAAQLMRRGHRAAAYHAELHKERKARVEEA
FADGDLKVVVATIAFGMGVDTPRVRLVVHAAPPASLEAYAQEAGRAGRDRRAATCIMLRD
PEEMDRRHASLARGHLAKEDMDTILAHLLGLRRRLRDARDNSALRPTLSLPYRLVARDVL
GLPKGKDPGKSLKFQSDRINRIVDELETNGLIEKLRHEQSLSHLRVQMEALSSLIAQRSA
LPKIEGMIVDVLARELEKCPGEIPALPEDKEALADACNPKRPPALSHLSQALNRLKEKGL
LHAVVELEVGLGPRGTAEKIVETWALKGEAVLDAVTDLFEEREAAAAEQEEGSEEKGAAD
AALLEKPLETTLMIVSRRAEGKLPEEVKLFPKEALQLLEELSELGLLEMEDRPSGMTRAL
SLKLPHDLDDASDLPLRSNRQIARVLAALRHLAGDQRFLEVELETLLDTLVSLDMDLEQT
WRRPDGSHLTLAEAKKLCRRHLRKLSELKVITVSRGLYPPREECTVRVAERSTNITVRSY
TKDMFTAGVEAFQQEEIRQLHLVDGFGSQVLEDESQAPALLRRYFKDASEESLEAVYEGA
ELELVRNNRPAPVGRQIKLRSRLDERQAAIVHGSTELQDTLILAGPGAGKTRVLVERIVW
LVSVERVPPDQILALCYSRRAAEEIRERLREDTALGRLGALVAVYTYHSFALQVLGKSFA
ELSDEAMPEQAIARKGEDLNEGPPTAFDLILKSASERLREHRRANGDMSDILLRRFRWAF
VDEFQDVTDTSFDLIREISQQSQKSSARQTRVKPVFTVKGGEQVPEPVVDVRFCAVGDDD
QNIYDFDGASGKHIRDFEKLFPGAARPELTWNYRSSGAILAAAAEIISGCSDRLKLNPIE
INPARCGDPLQGAYFQSQRPDLGKVALCWAEDGSIELQAAIAAARLLGLSGQVPKAQWKW
PSTAVLVRNRKHIAVVEGALEAAGIEVSRDLQGLVPMARVREALHVRGWLEEMGRLGRLI
CKEDADQAAARLDERFDNRWSAPIAEWLRDLSWDEGESGGLPARQLLDEFMEWAHGWRPR
QSGVAVLTAHSSKGLEFDNVVVLEAGWAKGYTLNVKDADRRLFYVAATRARHSLSLVSSG
LGIFRKMLDGRSADHLTKLNVAPHPEAVRAAITPRLMPCSVRDVFLSFPAWDGFRCTSTE
ESREGVRRTISNLRVGDRLILERTLQADSNPWHLFAERKGRRVRIGKMQKGFEPGADGQR
FSAMVFALVGWNKTDSEEGYQGSIKLDRWLTVVPAWSSKE
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtgttcaacaaggcctttgttccgaagaagcccaagcctctgacggcactctcg
cgaaggcgggagcctcgaaacttcgcggattttctgaagctcgcgacatccttcgatctt
gaaatgaaagggcgcgccggcagcccgctgacgcttcgggacgctgctgccattcctgct
gtctctgcgctcaaagacatcgagacttcgcgcaggggcatgagcgcacgtgatgtcgtc
aaggagttgaggcgccgccggctcgccataggccacaatgcggcccggttcgacatcccc
gagctcgagtctctggctggcacgacgctttcggatatccccctggtcgatacgctatgg
ctaagccccctcgccttcccggcaaacgatacgcacaggctggaaaagccctaccttgag
aaagacaaagtcctccccgatccggaggaggatgccaggaattctgttctgctgcttcgc
gatgaggtggaacgcctccgggcaatggatcgggactggctggagatcctctgctggctc
tgctgccttggacctgcgtctcttggctatgagttcctcttcgaggtcattttcgaaagc
attgagccgctgcccagcgcgccgctagaggctgcccgtgtggttgtccccaagatacgc
gcgatctttggcgacacgctctgccttcacggcttgcatgaccaggtgctgatggcgttc
aaatccggcaatggctggcctctggcctgggcccttagctggcatcgccataaggtcgag
cgggccgctcccgcgcgatggctgctggagaccttccccgagttccaactcgcgcttgat
gacctcggacggcgccggtgcagtcatcgatcctgcatccgctgccgggatcatggaact
ccgcttgagagcatggcgcactggtttccgccggccccgggacagatccttgcgttccag
ccgccctttgatctgggatatctgacgtatcaggaacaggttatgagggctgcgctcgcg
cggcgcgacactcttggcatcctgccgacgggcaccggcaagtcgcgctgcttccaggtc
cctgccctcgagcagcatgcgcgcaccggcgatctcgctgtggtgatctcccccctgaaa
gccctgatggaagatcagatcaagaaggcgaagtcagagaacctcccgggcgttgaccgg
cttcatggcgatctcgatgcggttgagtgtgagcgggtcttcgacgcggtgaggtcgggt
cacacggcgctcctctacatctcgcccgaggggcttggcggggccgcgatgcgaaagctc
cttgagagccggcggatcggcatgtgggtcttcgacgaggtccactgtgtgccgacatgg
ggaaagggcttcaggggagactattggagggcggtctcctgggcgcgcgactgcggcgcg
aagggaagcgacagggcaaccattctttgcctgacggccacagcccgcccggaaaccagg
aaagacatacagacagttttcagccagcgcctgggccggaggctgcaggtcatcgatggc
ggcgccgaccggcccaacctgacctaccgcgtactggagcgcgaaggggagctcgacgac
cagatcgacaggcttctgagagatccgcagctgctgcccgggaacgggcaggcgatcatc
tatgcctaccggcaaaaggataccctggagatcgcggcccagctcatgcggcgagggcac
cgcgcagcagcgtatcatgccgaacttcacaaggagcgcaaagcacgggtggaggaagcg
ttcgccgacggcgatctgaaggtggttgtagcgaccatcgcctttggcatgggcgtggat
accccgagagtgcgcctcgtggtgcatgcggctcctccggcctctctcgaggcctatgcc
caggaagcgggacgcgccggacgagaccgcagggctgcgacctgcatcatgctgcgggat
cccgaggagatggaccgccggcatgccagcctggcgcgcggccatctcgccaaggaggac
atggataccatccttgcccatcttctgggtctgcgtcggaggctccgggatgccagggac
aacagcgccctgcggccgacactctcccttccctacaggcttgttgcacgcgatgtcctc
ggattgccgaaaggcaaggatcccggcaaatctctgaagttccagagcgaccgcatcaat
cgtatcgtcgatgagctcgaaaccaacgggctcatagagaagctgcgtcatgagcagtcc
ctctcccacctgcgggtgcagatggaggcgctctcctccttgatcgcccagcgcagcgcg
ctgccgaagatcgaagggatgatcgtcgacgtccttgccagagagctggagaagtgccct
ggagagatccctgccctgccagaagacaaggaagcgctggcggacgcgtgcaacccgaag
cggcctccggccttgtcgcacctctcccaggcgctcaatcgcctcaaggagaagggactg
ctgcatgcggtcgtggaacttgaggtcgggctcggaccgcggggaaccgctgagaagatc
gtcgagacatgggcgctcaagggagaggcggtgctcgatgcggtgacggaccttttcgag
gagcgcgaggcggcggctgcggagcaggaagagggatcagaagagaagggcgccgctgat
gcagccctgctggagaaacctctagagacgaccctgatgattgtctcacgccgcgccgaa
ggcaagctgcccgaggaggtgaagctctttcccaaggaggcgctgcagctcctcgaagag
ctttcggagctcggtcttctggaaatggaggatcgtccatccggcatgacccgggcgctg
tccctgaagctaccccatgatcttgatgatgcttcagacctgccgctccgatcgaaccgc
cagattgcccgggttcttgcggccttgcggcacctggccggcgaccagcgtttccttgag
gttgaactcgagacactgctcgacacgctcgtttccctcgacatggatctcgagcaaacc
tggaggaggccagatggaagtcatctgacgctggctgaggcgaagaaactctgccgccga
catctgcgaaagctatcggaactcaaggtcatcacggtgtcccgagggctctatcctcct
agggaggagtgcaccgtccgggttgccgagcgcagcacaaatatcaccgttcggtcctat
accaaggacatgttcacggccggggtggaagccttccagcaggaggaaatccgccagttg
cacctcgtcgacggctttggcagccaggtgctggaagacgaaagccaggcgcctgccctt
ctgcgcagatatttcaaggacgcctccgaagagagcctcgaggcggtttacgagggcgca
gagcttgagcttgttcgcaacaaccggccggcgcctgtcggccggcagatcaaacttcgc
tcccgacttgatgaacgccaggcggcaattgtgcatggcagtaccgagcttcaggacacc
ctcatcctcgcgggcccgggagcaggcaagacgcgggtccttgtcgagcgcattgtctgg
ctggtctcggtcgagcgggtgccacccgaccagatcctggccctttgctacagccgccgc
gcggccgaagaaattcgcgaaaggcttcgggaagacaccgcgcttggacgcctcggcgcc
ctggtggcggtctacacctatcattcctttgccctccaggtgctcggcaagtcctttgcg
gaactctcggatgaggccatgcccgaacaggcaatcgcccgcaaaggcgaagacctgaat
gaaggaccgcccactgccttcgatctgatactgaagtctgcgagcgagcgtcttcgagag
cacaggcgagccaacggcgacatgtcggacatcctgctgcggcggttccgctgggccttt
gtcgatgagttccaggatgtcaccgacacgtccttcgatctgatcagagagatttcgcag
cagagccagaagtcttccgcgcggcaaaccagggtgaagcccgtctttaccgtaaagggc
ggagagcaggtgccggagccggtcgtcgacgtgcgtttctgcgccgtgggcgatgacgat
cagaacatctacgacttcgacggggcgagcggaaaacacatccgcgacttcgagaaactc
ttcccgggggcggcacgcccggagctcacatggaactatcgatcgagcggggccattctt
gcggccgcggcggagatcatctccggatgctccgatcgcctcaagctcaaccccatcgag
atcaaccccgctcggtgcggagacccgctgcagggggcgtatttccagtcccagcgtccc
gacctcggaaaggtcgccctgtgctgggccgaagacggctctatcgagcttcaagctgcc
atcgcagccgcgcgtctactcggcctttcaggtcaggttcccaaggcgcagtggaaatgg
ccctcaacggccgtcctggtccggaaccgcaagcacatcgccgtggtcgagggcgccctg
gaagctgcggggatagaggtatcccgggacttgcaggggctggtacccatggcgcgggtc
cgcgaagcccttcatgttcgggggtggctcgaagagatgggtcgtctgggtcgcctcata
tgcaaggaggatgctgatcaagccgctgcccgacttgatgagcgcttcgataaccgctgg
tcagctcccatcgccgagtggctgcgtgacctgtcgtgggatgagggtgagagcggggga
ttgcctgcgcggcagctgctcgacgagttcatggagtgggcgcacggctggcggccacgg
cagagcggcgtcgcggtgctgacagcccatagctctaagggccttgagttcgacaatgtt
gtggttctcgaggccggatgggccaaggggtatacgctcaatgtaaaggatgcggatcgc
cggctattctatgtggctgccacccgcgccaggcacagcttgagccttgtgtcttccggc
cttgggatattccgcaagatgctggatgggcgctccgcagatcatctcacgaagctgaat
gttgcgccacatccggaggcggtgagagccgccatcacgccgcgcctgatgccctgctct
gttcgcgatgtctttctgtctttcccggcttgggacgggtttcgatgcaccagcactgag
gagagccgggagggggtgaggcggacaatctctaatctgcgcgttggagatcgcctgatc
ctcgagagaacactgcaggcagacagcaatccctggcacctatttgccgagcgcaagggc
cgtcgcgttcgcatcggcaagatgcagaaggggttcgagccaggggctgacggacagaga
ttctcggcgatggtctttgccctggttggctggaacaagacagacagcgaagaaggctac
caagggagcatcaagcttgatcgttggctcacggtggtgccggcgtggtcatctaaagaa
tga
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integrated database retrieval system
