Salipiger sp. CCB-MM3: AYJ57_15590
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Entry
AYJ57_15590 CDS
T04443
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
yan
Salipiger sp. CCB-MM3
Brite
KEGG Orthology (KO) [BR:
yan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yan03019
]
AYJ57_15590
Enzymes [BR:
yan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AYJ57_15590
Messenger RNA biogenesis [BR:
yan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AYJ57_15590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
HA2_N
CON_HrpB
Helicase_C
ResIII
AAA_19
AAA_30
wHTH-PRTase_assc
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANT61882
UniProt:
A0A1B1PTM1
LinkDB
All DBs
Position
2:complement(372029..374476)
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AA seq
815 aa
AA seq
DB search
MDHLPIDAALPDLISALRAEGRAVLQAPPGAGKTTRVPLAMLKAGLTKGRILMLEPRRLA
ARAAATRMAETLGESAGETVGYRIRGESKTSKATRIEVVTEGILTRMIQVDPELAGIGAV
IFDEFHERSLNADLGLALCLEIAGALRDDLLLLAMSATLDAGPVGELMQAPVITSEGRSF
PVEDRWLDRAVPKGQRFEPAMAELIERAARETTGGILAFLPGEGEIRRTEGLLKGRLPKD
VTIRPLFGAMEFAAQRAAIRPEAQGRKLVLATSLAETSLTIEDIRVVVDGGRARRARFDP
GSGMSRLVTEKVTRAEATQRAGRGGRVAEGIAYKLWTKGEEGALQAFPPAEIETADLSGL
ALELALWGATPEDLPFLTAPHPGAYAEACALLKMLGALDGSGRITEHGRALARLPLHPRL
AHMLSLAGPKAAPLAALLAERDPLRGAPSDLGFRLEAIRDLRRFSQSRPYEVNRAALERI
KTEAKRLARAGGAGSAGDPLSPAAQAALAYPDRIGLRRKGDAPRFQLSGGKGAVMDEGDP
LAGTRLIVVTDTDGNPREARIRQAIPISESELRDLFGAQIAWHDVCAWSKRERRVVARRQ
ERFGAIALDDRLWKEAPPEAIAQAMLEGVRDLGLALSDAARRFCARVEIGREAGLGLPDM
GPEALMAELEDWLLPYLTGVKTAEDWKRFDLLPALRARLDWGQMQALDASVPGKFVTPLG
REIPIDYSGEHPEITLRIQEMFGQREHPRVGKQPLRVTLLSPARRPVQTTMDLPGFWQGS
YADVRKDMKAQYPKHPWPEDPREADPTLRAKPRGR
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggatcatctgcccatcgacgccgcccttcccgatctcatttccgccctgcgtgccgag
ggccgcgcggtgctgcaggcgccgccgggcgccggcaagactacccgtgtgccgctggcg
atgctcaaagcagggctcaccaagggccgcatcctgatgctcgagccgcgccggcttgcc
gcgcgcgccgccgccacgcgtatggccgagacgctgggcgagtccgcgggcgagacggtg
ggctaccgcatccgcggcgaaagcaagacctccaaagccacccggatcgaggtggtcacc
gagggcattctcacccggatgattcaggtcgaccccgagcttgcgggcattggcgcggtg
atcttcgacgagttccacgaacgctcgctcaacgccgatctggggctggcgctatgtctc
gagatcgccggggcgctgcgcgacgatctgctgctgctggccatgtcggcgacgctcgat
gcggggccggtgggcgagctgatgcaggcgccggtcatcacctccgagggccgcagcttt
cctgtcgaggatcgctggcttgaccgcgccgtgcccaagggccagcgcttcgagcccgcg
atggccgagctgatcgagcgtgccgcgcgcgaaaccaccgggggcatcctcgcctttctg
ccgggggagggcgaaattcgccgcaccgaggggctgctcaaggggcggctccccaaggat
gtgacgatccgtccgctctttggggccatggagttcgccgcgcagcgcgccgccatccgg
cccgaggcgcagggacgcaaactggtgctcgccacgtcgctcgccgagacttcgctgacc
atcgaggacatccgcgtggtggtcgacgggggccgcgcccgccgtgcacgcttcgatccc
ggctcgggcatgtcgcgtcttgtcaccgagaaggtcacccgcgccgaggccacgcagcgc
gccggtcgcgggggcagggtggccgagggcatcgcttacaagctctggaccaaaggcgag
gagggcgcgctgcaggcgtttcctcccgccgagatcgaaaccgccgacctgtcggggctg
gcgctggaactggcgctctggggcgccacacccgaggatctaccgttccttaccgcgccg
caccccggcgcctatgccgaggcctgcgcgctgctcaagatgctgggcgcacttgatggc
tctggccggatcaccgagcatggccgcgcgctggcgcgcctgccgctgcacccgcgtctg
gcccatatgctcagcctcgccgggcccaaggccgcgccgcttgccgcgttgctggccgag
cgcgatccgctgcgcggcgcgccgtcggatctgggcttccggctcgaggcgatccgcgat
ctgcgccgcttcagccagagccgcccctatgaggtgaaccgcgcggcgctggagcggatc
aagaccgaggccaagcgcctcgcccgcgcaggcggcgcaggcagcgcgggcgatccgctc
tcgcccgcggcgcaggcggcgctggcctatcccgaccggatcggtctgcgccgtaagggc
gatgcgccgcgcttccagctctcgggcggcaagggcgcggtgatggatgagggggacccg
ctggccggcacccgcctgatcgtggtcaccgacaccgatggcaacccgcgcgaggcgcgc
atccggcaggcgatcccgatcagcgaatccgagctgcgcgatctctttggcgcgcagatc
gcctggcatgatgtctgcgcgtggtcgaagcgcgagcgccgcgtcgtggcgcgtcggcaa
gagcggttcggggccatcgcgctcgacgaccgcttgtggaaagaggcaccccccgaggcc
atcgcgcaggccatgctggagggggtgcgcgatctggggctcgcgctgtcggatgccgcc
cgccgcttctgcgcgcgggtcgagattggccgcgaggcggggctgggcctgccggacatg
ggcccggaggcgctgatggcagagctcgaggactggctgctgccctatctcaccggggtg
aagaccgccgaggactggaagcgcttcgaccttctgcctgcgctgcgcgcgcggctcgac
tgggggcagatgcaggcgcttgatgcgtcggtgccgggtaagttcgttacgccgctgggt
cgcgagatccccatcgactactccggcgagcaccccgagatcaccctgcgcatccaagag
atgttcggccagcgcgagcacccgagggttggcaagcagccgctgcgcgtgactcttctg
tcaccggcgcgccgcccggtgcagacgacaatggacctgccgggcttctggcagggatcc
tatgccgatgtgcgcaaggacatgaaggcgcaataccccaagcatccgtggcccgaagac
ccgcgcgaggccgacccgacgctgcgcgccaagccgcgcgggcgctga
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