Yersinia alsatica: N0H69_21690
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Entry
N0H69_21690 CDS
T08521
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
yas
Yersinia alsatica
Pathway
yas02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
yas00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
N0H69_21690 (pdeR)
Enzymes [BR:
yas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
N0H69_21690 (pdeR)
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GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
RIP
Motif
Other DBs
NCBI-ProteinID:
UWM45197
UniProt:
A0ABY5USS3
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Position
4790866..4792860
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AA seq
664 aa
AA seq
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MFEDQDTSILNTYFGTHSPFWRLAFDSQALELSAIKETPNIAIPLNSVQTMKIRSLTGIT
ASLDIEIQIYGHPLHLHLVGRKINDKEWGGTASAYADTESVARDLVMGLSFAEQVVSEAN
SVIVILDKDGYVQRFNHLSEEYTGKKEQDVIGKNVYDLFMTAKEGASSRKNIEGFFQRGA
SYEVERWVNTVKGKRLFLFRNKFVHSGSGKNERYLICSGTDITKERRAQERLRILANTDM
ITGLPNRHAIHERINSAIQTRGDTSVGIIYLDLDNFKKVNDHYGHMFGDRLLKDVSLAIL
SCLGESEMLARLGGDEFIVLVENATMNSLEMITQRILNRMKLPFRVGLIEVYTGCSIGIA
LCPEHGDTLENIIRSADTAMYTAKEHGKQTYSIFSQQMNKKISEYVWLDTNLRKGLEQHQ
LQVYYQPKISTKTGKVHSVEALVRWLSPERGLIAPLEFISYAEESGLIRPLGKWVLQTSM
QQAVDWKKRGINLRVAVNVSARQLIDEAIVTSFIESLEASNLECSLVDVELTESCLIDDE
DAAINIMKQLRHLGAQVHLDDFGTGYSSLSQLARIPIDAIKLDQSFVRHIDNNPISQSLV
RAIIVVAEALKMRVIAEGVETQEEEAFLDSIGIDEKQGFLYAKPMPADELEHWLVTQHPH
LLLD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgttcgaagaccaagacacatcgatccttaacacttattttggcacccatagcccattt
tggcggcttgcttttgatagccaggctttagagttgtctgcgattaaagaaacacccaat
attgcaatacctctgaattcagttcaaacaatgaaaattcggagcttaaccggtattact
gccagtttagatattgaaattcaaatttatggtcatccccttcatttacatcttgtgggc
cgtaaaattaatgacaaagagtggggcggaacagcttccgcgtacgctgatactgaatct
gtcgcccgtgatttagtgatgggcctttcctttgcagaacaggtagtttctgaagctaat
tcagttattgttattcttgataaagatggttacgtccaacgttttaatcacctcagcgaa
gaatatacgggtaaaaaagaacaggacgtcattggcaaaaatgtctatgacttgtttatg
accgccaaagaaggagcgtcatcacgcaaaaatattgagggtttcttccagcgtggtgcc
tcttatgaggttgagcgttgggttaataccgtcaaaggaaagcgcctgttcttattccgt
aataaatttgttcatagtggcagtggaaaaaacgaacgttatcttatctgttccggcact
gacattaccaaggagaggcgcgctcaagagcgcctcaggattctggctaataccgatatg
attactggattgcctaaccgccacgccattcatgaacgtattaatagcgcaatccaaacc
cgtggtgatacctcggtaggtattatttatcttgatctcgataacttcaaaaaagtgaat
gaccattatggtcatatgtttggtgatcgattactgaaagatgtctcgctagctatatta
agctgcttgggtgagagcgaaatgctggcccgacttggcggtgatgagtttattgtttta
gtcgaaaatgccaccatgaactcgcttgaaatgataactcagcgaattctaaaccgcatg
aaattgcctttccgggtggggttgattgaagtatataccggatgctctattggaatagct
ttatgcccagagcatggtgacacattggaaaatattattcgcagtgcagataccgccatg
tacacagcaaaagaacacgggaagcaaacctattcgattttctcacaacagatgaataaa
aaaatctcagaatatgtttggctagataccaatttgcgcaaaggtttagaacaacatcag
ctgcaagtctattaccaacctaaaatatccacaaaaacaggaaaagtgcacagtgtcgag
gcgttggttagatggctatcaccggaaaggggtttaattgctccgttggagtttatctca
tatgcagaagaatcagggttgatcagaccacttggcaaatgggttctacaaacgtcgatg
caacaggctgtcgattggaaaaaacgtgggattaacctgcgagttgcagtgaatgtttct
gcccgccagttaattgatgaggctatcgtcaccagctttattgagtcccttgaagccagt
aacctggaatgcagtctggtcgatgttgaattaacagaaagttgcttaattgatgatgaa
gatgctgccatcaatatcatgaaacagttacggcacttaggtgctcaggttcatttagat
gactttggcacgggttattcttcactttctcaattagcgcgtatccctattgatgcgatt
aaactagaccaaagttttgttcgccatattgataataatcccatttcacaatctctggtt
cgagccattattgttgtcgccgaggcactgaaaatgcgagtgattgccgaaggggtggag
actcaagaggaagaagcatttctcgactccattggcattgatgaaaaacaagggtttctt
tacgccaaaccaatgcccgcagatgaactggagcattggctggtaacacaacaccctcac
cttttattggattag
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