Ylistrum balloti (Ballot's saucer scallop): 132546018
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Entry
132546018 CDS
T11245
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03022
Basal transcription factors
yba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
132546018
09124 Replication and repair
03420 Nucleotide excision repair
132546018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yba03021
]
132546018
03400 DNA repair and recombination proteins [BR:
yba03400
]
132546018
Transcription machinery [BR:
yba03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
132546018
DNA repair and recombination proteins [BR:
yba03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
132546018
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
132546018
NCBI-ProteinID:
XP_060065696
LinkDB
All DBs
Position
Unknown
AA seq
461 aa
AA seq
DB search
MAGPSAASKTLDCKDLHSYLKTLPSDTLDNLYNHPATCLAVFRELPELSKHYVMRMLFVE
QAVSQSVVAMWVTNKHQNEHKTSARVLSELRVWQEQGMVGGLPGWTLSPTFRQNMRVALL
GGERAWIGGGALIPDKHAKDIPFLDKYALERWECVLHFMVGSSEGTDGVGNDIIDVLLHS
GLMKSEPNEPLPSITPAGFQFLLMDSSSQVWYFMLQYLETVESRGMNLTECLSFLFQLSF
STLGKDYSTEGMTEQQLRFLQHLREFGLVYQRKRKAMRYYPTRLAVNLASGVTSLNTDTN
QQGYLMVETNYRVYAYTDSPLKVALVALFCEMLYRFPNMAVGNLSRESVREALVRGITAE
QIISFLRTHAHPKMLKQNPVLPPTITDQIRLWEMERDRFKFTDGVLYSQFNSQSDFELLR
DYAKDLDVLTWENPSKRVMVVSRSGHDDVKRFWIRQRQSNT
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcccgtctgctgcatctaaaacattagattgtaaagatttgcatagctacctc
aagactctaccatcagacactttggataatttgtataatcatccagcaacatgcctggca
gttttccgtgagctgccagagctgtccaaacactatgttatgaggatgctgtttgttgag
caggctgtgtctcagtctgttgtagccatgtgggtcaccaataaacaccagaatgagcac
aagacatctgcacgggtactgtcagaactacgggtatggcaggaacagggtatggtagga
ggtctgcctggttggacactcagccccaccttcagacaaaacatgagagtggccctattg
ggaggagaaagagcatggataggtgggggagctctgattccagacaaacatgctaaagac
attccattcctggacaagtatgccttggagagatgggagtgtgtactacacttcatggtt
gggtcatctgaaggtacagatggagttggtaatgacatcatagatgttcttctacattca
ggtctcatgaaaagtgagcctaatgaacccctaccgtctataacacctgctgggttccag
tttctccttatggacagctcatcacaagtctggtacttcatgctgcagtacttagagact
gtagagtcccgagggatgaatctaaccgagtgtctgtccttcctcttccagctcagcttc
tccacactaggcaaggattattccactgagggcatgacagaacaacagcttcgcttctta
caacatcttagggagtttggactggtctatcagagaaagagaaaggccatgcgatattat
ccaacacgcctggctgttaatctagcatcaggtgtaaccagcctaaacactgataccaat
caacaaggctacctgatggtggagaccaactacagggtgtatgcatacacagattctcca
ctaaaggttgctctggtggcactattctgtgagatgctgtacaggtttccaaacatggcc
gtgggtaatttgtccagagaaagtgtgagagaagcattagtccgtggcatcacagcagag
cagataatcagcttccttaggacccacgctcacccaaaaatgctgaaacaaaatcctgtg
ctacccccaaccatcacagatcagatacgtttatgggagatggaacgagacaggttcaag
ttcacagatggtgttctttacagtcagttcaactctcagagtgactttgaactccttaga
gactatgcaaaagatctggatgtactgacatgggaaaacccatccaaacgtgtgatggta
gtgtctcgatcgggccatgatgacgtcaagcgtttttggatacgccagcgacagagcaac
acctga
DBGET
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