Ylistrum balloti (Ballot's saucer scallop): 132546586
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Entry
132546586 CDS
T11245
Name
(RefSeq) ATP-dependent RNA helicase DDX42-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
yba
Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132546586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
yba03041
]
132546586
Enzymes [BR:
yba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132546586
Spliceosome [BR:
yba03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132546586
Complex B
132546586
Complex C
U2 SnRNP specific factors
132546586
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
DUF382
Motif
Other DBs
NCBI-GeneID:
132546586
NCBI-ProteinID:
XP_060066289
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MFHKGGDGKPRGFGFSGFALGNKKADEPDPSKPVSGMAGMPSNAGGRFMPGRSFGYSTNI
GKRRARNEDEYFDDDDEEGDLEYQPAPGSPSADDKNKDGSDSDDPLDAFMADIEKEVKGK
MKESKEHKEKSKEKKKDKGVRDDIENEDVQEAFFRYMEENPMAGVILDEDEAGIEYDADG
NPIIPEKNKMIDPLPPIDHTEIDYQKFVKNFYQEHEDIAKLTQTQVDELRHKLGIRVSGF
SPSNPATSFAHFGFDNELMGVIRKSEYSQPTPIQAQGVPTILNGRDIIGIAKTGSGKTAT
YLWPLLVHIMDQKELETGDGPIGLILAPTRELSQQIYHEAKKFGKVYNINVVCAYGGGNM
WEQTKACQEGAEIIVATPGRLIDLVKKKATNLQRVTYLVFDEADRMFDMGFEPQVRSIAN
HVRKDRQTLLFSATFKKKVERLARDILLDPVRVVQGEAGEANEDVTQYVEVLPAGPAKWT
WLIKNLVRFTSIGSVLIFVTRKSNSEELATNLRTRDFSLGLLHGDMGQMERNEIITAFKR
KEMPILVATDVAARGLDIPYIRTVVNYDVARDIDTHTHRIGRTGRAGEKGYAYTLLTEKD
KDFAGPLVRNMEVANQFVPKSLMDLALQNPWFSKSRFKQGKGKRLNVGGKGLGFKERPGL
GAESSTRTQDSSSMASFRGVGSSAGPQSDRMSAMKQAFSAQFKSNFVAAADNIEPQKTGH
ILEPINATRNPAQPQAASDEPNSKRKKRSRWD
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgtttcataaaggaggagatggaaaaccgcgaggatttggattttccggatttgcactc
ggaaacaagaaagcagatgaaccagacccttcaaaacctgtgtctggtatggcaggaatg
ccaagtaatgcaggtggcaggttcatgccagggcggtcatttggatatagtactaacata
gggaaacggagggcaaggaatgaagacgagtattttgacgatgatgatgaagaaggagac
cttgaatatcagcctgctccaggaagtcccagtgcagatgataaaaataaagatggcagt
gatagtgatgatccactggatgcatttatggcagacattgagaaagaagtaaaagggaaa
atgaaagaaagcaaggaacacaaagaaaaatcaaaggagaagaaaaaagacaaaggagtg
cgggacgatatcgaaaatgaagatgttcaggaagcattttttcgatacatggaggaaaac
cctatggctggtgttatccttgatgaggacgaggcaggaattgaatacgatgctgatgga
aatccaatcataccagaaaaaaataaaatgattgatcctttgcctcctattgaccataca
gaaattgactatcagaaatttgtaaagaacttttaccaagaacatgaagatattgccaaa
ctaacccagacacaggtggatgaactacgtcataaacttggaataagggtatccgggttt
tccccttcgaatccagcaaccagctttgcacacttcggttttgataatgaactgatggga
gtgatcagaaagtcggaatactcacagcccaccccgatacaggcccagggggtgccaacc
atcctgaacggacgagatatcatcggtatagctaaaactgggagtggaaagactgccaca
tatctctggcccctccttgtacacataatggaccaaaaggaactggagactggggatgga
cccatagggcttatactggcccctaccagggaattgtcacaacagatataccatgaggcc
aagaaatttggcaaagtctacaacatcaatgttgtgtgtgcatatggaggtggcaacatg
tgggaacagacgaaggcatgtcaggaaggggcggagatcatagtggccacacctggtcgt
ttgatagacctggtgaagaagaaagccaccaacctccagcgggtcacttatcttgtgttt
gatgaagctgaccgtatgtttgatatgggctttgaacctcaggtcaggtctatagctaac
catgtgagaaaggaccgacaaacattactctttagtgccaccttcaagaagaaggtggaa
cgcttagcaagagacattcttctggatcctgtacgagttgttcaaggggaagcaggggag
gcaaacgaggatgtcactcaatacgtagaggtactgccagctggaccagccaagtggaca
tggctcatcaaaaaccttgttcgttttacttcaattggtagtgtgttgatatttgttacc
cggaaatccaactcagaagaactggctacaaatttacgcactagagatttctcattgggc
cttctccatggtgacatgggacagatggagagaaatgagatcatcacagcgtttaaacgc
aaggagatgcctatccttgtagccacagacgtagcagctagaggtttggacattccgtat
atcaggactgtggtgaactatgatgtagcacgagacattgatacacatacacacaggatt
gggcgaacaggtcgagcaggtgagaaaggctatgcctacaccctactgacagagaaggat
aaggactttgcagggccacttgtaaggaacatggaggtagctaaccagtttgtacctaaa
tccctgatggatctagcattacagaatccttggttcagcaaaagccgattcaagcaagga
aaggggaagagattgaatgtgggaggaaaaggactcggcttcaaagagaggccaggatta
ggggcagaatcaagcacaagaacccaggattcctccagtatggctagtttccgaggtgtg
ggatcatctgctggacctcagagtgaccgtatgtctgctatgaaacaggcgttctcagcg
cagttcaaatccaactttgtggcggccgccgataatattgaaccacagaagactggtcac
atcctagaaccaattaatgcaacccgcaatcctgcacaaccccaagcagcctcagatgaa
cctaacagcaaacggaaaaaacggtcacgctgggactga
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