Ylistrum balloti (Ballot's saucer scallop): 132549398
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Entry
132549398 CDS
T11245
Name
(RefSeq) 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03008
Ribosome biogenesis in eukaryotes
yba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132549398
09123 Folding, sorting and degradation
03018 RNA degradation
132549398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yba03019
]
132549398
03009 Ribosome biogenesis [BR:
yba03009
]
132549398
03016 Transfer RNA biogenesis [BR:
yba03016
]
132549398
03036 Chromosome and associated proteins [BR:
yba03036
]
132549398
Messenger RNA biogenesis [BR:
yba03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
132549398
mRNA degradation factors
5'-3' decay
5' exonucleases
132549398
Ribosome biogenesis [BR:
yba03009
]
Eukaryotic type
Pre-60S particles
RNases
132549398
Transfer RNA biogenesis [BR:
yba03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
132549398
Chromosome and associated proteins [BR:
yba03036
]
Eukaryotic type
Gene silencing
piRNA pathway
132549398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
132549398
NCBI-ProteinID:
XP_060069308
LinkDB
All DBs
Position
Unknown
AA seq
1990 aa
AA seq
DB search
MGVPKFYRWISERFPCLSEVVKEFQIPEFDNLYLDMNGVVHTCSHPDDGNPHFRITEEKI
FKDIFYYLEFLFRTIKPKKVFFMAIDGVAPRAKMNQQRGRRFRSARDAEELERKARESGE
TLPTEKRFDSNCITPGTEFMVRLQEQLKYFVVNKISTDPLWQGVQVHLSGHETPGEGEHK
IMDYIRHEKSKPNYDHNTRHCLYGLDADLMMLGLSSHEPHFSLLREEVKFGKKDSKKPST
PEETTFHLLHLSLFREYLDFEFSALKDKLPFGYDLERVIDDWILMGFLVGNDFIPHLPNL
HINHDALPLIWSTYINVLPRCGGYLHTGGKLHLDRFEIFMTELAKFDFEKFEETFADLKW
LESKTEKCPTRKKNHHKEISKLKQRKQDDNQFAALMEESGVNVDEEFDEDFMDGDGLEFH
HLPDIKQDSHGSTFDEEFRVHKRHYYMTKMDYKQFTDDVLREQAECYVRGIQWILYYYFD
GVPSWSWFYPHHYAPYISDIRSFKHMEIQFDRSKPFLPFQQLMAVLPSNSKDLLPQAYWS
LMLMDNSEIIDFYPVNFETDLNGKLQDWEAVVLIPFIDEKRLLTAMEKVECQMTPSEKKR
NCHSPSLCFDYVPDLLPAYPSSLPGTFSDILINHAQLTLIPKDEFQLPRHLIKKGLLKET
RQDVYFPGFPTFKHLPHKAYLKKEGVKVFSANSRGENMMLSLLPVKDEDIKTIANSVLHT
SVFVNWPHMMEVKVVSVSDGGTRYELSTTKCEGGQTKTRVVEEEMTPSDQTIWRKDVVAI
RERYHDRLGVDVGQTHVSLRALPLVGRKYVCGAHGKIVLEKQFASNPVTFLYQTSVKNLN
VYDTSFCQFSTLGELFPAKEAVFMLGWPHYGCQGEVVDIEDDSRVRINVSILEEPSLTSV
EDSQDYLGIQYYPGYAVAPRLSITSHFLSRMTGCIMVTPGSPDNPNERFKTNIGLNLKFT
KRNEEVPGYTKKTEEGWTYSDKALQVVSEYLREFPEIWSYISSKDSGRGDNFYETELFKD
GSPHSLKKMTDYVKSLPCSNVKIMKAGAEILDQGVISAVEEEVQKVIEVNKRKQRRVKMQ
VKPHLLFKPMVGQGNMLPDPSVELYLFDRVVNVRKGYPVPFGLRGTVTGIHLEEKESDTI
YDIVFDDEFQGGITLRCSPGKGYRMPKSGLINLSHGIRKNERKTGKAAANQQALYKYHNS
ANQQSYNKRQQNFDSPTRSNNMSYAAASQGGRSDNRYRNPGNYNDNRTFTKGEKQYQNLR
SEQDNNWRRKDSNQDFRGSPNRVNSNWREGCKENSQHSQLENPSQQSDLHWKSFNAEGGA
SSPKFVTPKVTQSAKSTPGKRDGTKGQTGKAFVEPQNSDFLNMWQELKSSGNLDQSGKSP
SKDQPGTSISINQPGKSLCKEQPGMTLSMAAAALEKLPKPSVPPLEKDQPLVSVTTEDSK
ISVESLFSQANKLQHSVDNDQFSAMIKSLEISSQDSTLTMEDGSIVVRSKSPARDADAEI
KQMLNIGSSASSLEPGPVKQQEVNTTVNPSPKTYGRQMSVQELFEGIMQPAKHAAKSETN
ATETINDDRSHHSDPKPQGSAAQAPASKSNTSAGNYTTSNTSLPPGLVHPYPPPLQVPPP
AMMHPMTNRPRQQSSQYQARGTHPNVQFRGHHQGNQLQKPAQRNPVLELVARCKMMGLHE
PKYDFLGKVGSFCCVVTLSNGHRFMGSKTRTKEEAAESAAGVVLVNMMPPQAMHPLMTPR
AFGGMPAQMMQHPQFSSPNSAFKPVSPKEFIEHPRGHHSQPPNYTGNQSQKGRQNQAANQ
YSDNRYHQQQQQAPPHYHDSRGHYQTSKQDNRNMSYVPNQGHYQMQRQKVSPNQRADNKG
LDSKDASPPKSNPFVPMQVTRKTPSKRRESESRDSNGQLMDTSPRSDNSPWSDKDHSRSE
PPNTARDLFGDKSQKSVMQEPQTAKTELNGQVPKEATSAKSPRQSHQQSKSSGQPTKRRS
RMAANFSMGN
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccgaaattttacagatggattagcgaacgctttccatgtctgagtgaagtt
gtaaaggagtttcagattcctgagtttgacaacctttacctggacatgaatggcgttgtc
cacacatgttcacaccctgatgatggcaatccacatttcagaatcacagaagagaaaata
tttaaagatatattttattacctggagtttttgtttcgtaccatcaaaccaaagaaagtt
ttcttcatggcaatagatggtgtggctccccgagcaaagatgaaccaacagcgaggacga
agattcagatctgcacgagatgcagaagaattagaacgcaaagcaagggagtcaggtgaa
acacttcctacagagaaaagatttgactccaattgtattacaccaggtactgagttcatg
gtacgactgcaggaacagttgaagtactttgttgtgaacaagatctccacagatccacta
tggcaaggtgtgcaggtgcacttatcaggccatgagacgcctggtgagggagaacacaag
atcatggattatatccgccatgagaaatccaagccaaattatgaccacaacacaaggcat
tgcttgtatggtttagatgctgatctgatgatgctgggtctttcaagtcatgaacctcat
ttctccctactaagagaagaagtaaaatttggtaaaaaagactcaaaaaaaccatcaaca
cctgaagagacaactttccatcttttacatttgtccttgtttcgagaataccttgacttc
gaattttcagcattgaaggacaagctaccctttgggtatgaccttgaaagggttattgat
gactggatcctgatggggtttttggtaggaaacgacttcattcctcatctacctaaccta
cacatcaatcatgatgctctgccactcatctggtcgacatacatcaatgtgttacctcgc
tgtggagggtatctccatactggtggcaaactacacctggacagatttgagatcttcatg
acagaactagccaagtttgactttgaaaaatttgaagagacatttgcagatctgaaatgg
cttgaaagcaaaacagaaaaatgtcctacaaggaagaaaaaccaccataaggaaataagc
aaactaaaacagagaaaacaggatgataatcagtttgctgccttgatggaggagagtgga
gttaatgtggacgaggaatttgatgaagactttatggatggggatggattagaatttcat
cacttacctgatatcaaacaagacagtcatggttccacatttgacgaggagtttcgagta
cacaaacgtcactactacatgacaaaaatggactacaaacagttcacagatgatgtgttg
agagaacaagcagagtgttatgtgcgaggtatacagtggatattgtattactactttgat
ggagtaccatcctggagttggttttatccccaccactatgcaccatacatcagtgatatt
aggagtttcaaacatatggaaatccagtttgaccgcagtaaaccctttctaccgttccag
cagttgatggctgtactgccatctaacagcaaggacctattgcctcaagcatactggagt
ttaatgctaatggacaactctgaaatcattgatttctacccggtcaacttcgaaactgat
ctcaatggaaagctgcaggactgggaggctgtcgtccttattccattcatagatgagaaa
cgtttgctcactgccatggaaaaagttgaatgtcagatgacaccctcagaaaagaagaga
aattgtcacagtccaagtctgtgttttgactatgtccctgatctcctgcctgcctatccc
tcgtccttaccaggaactttctcagatattctcatcaaccatgctcaactaacgctgatc
cccaaagatgaattccaactgcctcgtcacctcatcaagaaagggctactaaaagaaaca
cgacaggatgtgtatttccctggctttcctaccttcaagcatctacctcataaggcttac
ttgaagaaagagggtgtgaaagtgttttcagccaatagtcgtggagaaaatatgatgctt
tcacttctcccagtaaaagatgaggatataaagactattgccaactctgtcctgcacacc
agcgtgtttgtaaattggcctcatatgatggaagtcaaggttgtctctgtttctgatggt
ggtacacgatatgaacttagtactactaagtgtgagggtggccagacaaagacgagagtt
gtggaggaggagatgaccccctctgaccagactatctggaggaaggatgttgtagctatc
agggagaggtatcatgaccgcctcggagtggatgtgggtcaaactcatgtatctcttagg
gcattacctcttgtgggcaggaagtatgtttgtggagcacatggaaagattgtgttggag
aaacagtttgccagtaatcctgtgacttttctttaccaaacatctgtcaagaacctgaat
gtgtacgacacatctttctgccagttcagcacgcttggagagctgtttcctgccaaggaa
gctgtcttcatgctgggatggcctcactatggttgtcagggggaggtcgttgatatagaa
gacgattcccgagtgagaataaatgtgtcaatccttgaggaaccttcactaacctctgtg
gaggacagtcaggattatctagggattcagtattatcctggatatgctgttgcccctcgg
ctttccatcacctcccactttctgtcacggatgactggctgcatcatggtgactcctggg
tcacctgacaatccaaatgaacgttttaaaactaatatcggtctcaacttgaagtttaca
aagagaaatgaggaggtgcctggatacacaaagaagacagaagagggatggacttactcg
gacaaagccctacaggtggtcagtgaatatctgagagaatttcctgaaatatggtcttat
atcagttctaaagacagtggcaggggagataacttctatgagacagaactctttaaggat
ggaagcccacacagcctgaagaagatgacagactatgtaaagtcattaccttgtagtaat
gtgaagatcatgaaggccggggcggagatactggatcagggtgttatcagtgcagtagag
gaggaagtccagaaagtcattgaagtcaataaaaggaaacagcgcagagtaaagatgcaa
gtgaagccacacttgttgttcaagccaatggttggacaggggaacatgttaccagacccg
tctgtggagctctatctgtttgatcgagtggtcaatgtaaggaaaggttatccagtaccg
tttggtctgagaggcacggtcactgggatccatctagaggaaaaggaaagcgacacaata
tatgacatagtgtttgatgacgagttccaaggggggatcactctaaggtgttcaccaggc
aaaggctacagaatgccaaagtcaggactgattaacttatctcatgggatacggaagaat
gagagaaaaacaggaaaagcagcagccaaccaacaggctctttacaagtatcacaattca
gccaatcaacagtcatataacaaaaggcagcagaactttgattctccaacaagatcaaac
aatatgtcttatgcagcagctagtcagggaggtagaagtgacaatcgctacagaaacccg
ggtaattataatgacaatagaacctttaccaagggagagaagcagtaccaaaacttacgt
tctgagcaggataacaactggagaaggaaagattctaaccaagactttagggggagtcca
aacagagtgaacagcaactggagagagggatgtaaagagaacagccaacactcacagttg
gaaaacccatcccagcagtctgatttacactggaaaagtttcaacgcagagggtggagca
tcttctccaaagtttgtcactccaaaggtcacacagtctgctaaatccacaccaggcaag
agggatggaaccaaaggccaaacaggaaaggctttcgtggaaccgcagaactcggatttc
ctaaatatgtggcaagaattaaaatcctctgggaacttggatcaatcaggaaagtcccct
agtaaggatcaaccaggaacatcaattagtatcaatcaaccaggaaagtctctttgtaag
gagcaaccaggaatgactctaagtatggctgctgcagcgctggaaaaactgcccaaacca
tctgtgcctccattagaaaaagatcaacctttagtttctgtaacaacagaggactccaag
atttctgtggagagtctatttagccaagctaataaattacaacacagtgtagacaatgat
caatttagtgccatgattaaatctctggagatatccagtcaagattccacgcttacgatg
gaggatgggtccattgttgttcgtagtaagagtccagccagggatgctgatgctgaaata
aaacagatgttgaacattggttcatcagcatcttctttggagcctggacctgttaaacag
caggaagtcaacacaacagtgaatcctagtcctaaaacctatggacgacaaatgtctgtt
caggaactgtttgaaggtataatgcagccagctaaacatgcagcaaaatctgaaactaat
gcaacagagacaatcaatgatgacagatcccaccatagtgatcctaaaccccagggatca
gcagcccaagcccccgcctcaaagtcaaacacatctgcaggaaactacactacttccaac
acatccctgccgccagggttagtgcatccctaccccccaccactacaggtcccgcctcct
gccatgatgcatccaatgacaaatcgccctagacagcagtcttcacaataccaggccagg
ggaacacatcccaatgttcagtttagaggacatcaccaaggcaaccaactacaaaaacca
gcacaaagaaatcctgtgctggagttagttgccaggtgtaaaatgatgggtctacatgaa
cctaaatatgattttcttggaaaggtgggctccttctgctgtgttgttactctttccaat
ggacatagattcatggggtctaaaactcgcacaaaagaggaagcagctgaaagtgccgca
ggtgtagtgcttgtaaacatgatgcctccacaagccatgcaccctttgatgacaccaagg
gcctttggtggcatgccagcccagatgatgcagcatcctcagttctcctcacctaactca
gccttcaaacctgtttctcctaaagaatttattgaacatcccagaggtcatcattcacaa
ccacctaactacactggaaaccaatcacagaaggggagacaaaaccaagcagccaatcag
tattcagataacagataccaccaacaacagcagcaggcaccccctcactatcatgatagt
cgaggacattaccagacatccaaacaggataacagaaatatgagctatgtacccaatcag
gggcattatcagatgcaaagacagaaagtctcacccaatcaacgagcagataacaaaggc
cttgacagcaaagatgcctctcctcccaaatctaatccatttgtacccatgcaggtcact
cgtaaaacacctagtaaacgacgggaatcggagagcagagacagtaatgggcagttaatg
gacacaagccccagatctgacaatagcccatggtcagataaggatcacagcaggtctgag
ccacccaacactgcccgtgacttgtttggtgataaatctcaaaaatctgttatgcaggag
cctcagacagccaagactgaactaaatggacaggttccaaaagaagcaacttctgccaaa
tctccccgacaaagccaccaacagtcaaaatcttcagggcagccaacaaaacgtcggtct
agaatggctgctaacttcagcatgggtaactag
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integrated database retrieval system
