Ylistrum balloti (Ballot's saucer scallop): 132549774
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Entry
132549774 CDS
T11245
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03013
Nucleocytoplasmic transport
yba03015
mRNA surveillance pathway
yba03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132549774
09122 Translation
03013 Nucleocytoplasmic transport
132549774
03015 mRNA surveillance pathway
132549774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yba03019
]
132549774
03041 Spliceosome [BR:
yba03041
]
132549774
Enzymes [BR:
yba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132549774
Messenger RNA biogenesis [BR:
yba03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132549774
Spliceosome [BR:
yba03041
]
Complex C
Other components
EJC/TREX
132549774
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132549774
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Cas9_PI
Utp25_C
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-GeneID:
132549774
NCBI-ProteinID:
XP_060069719
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MADNENEAELLDYEEEENEATADGAGDVQQQIKKDVKGTYVSIHSSGFRDFLLKPELLRA
IVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVL
AHTRELAFQISKEYERFSKYMNSTKIAVFFGGMSVKKDEEVLKKNCPHIVVGTPGRILAL
VRSKQLVLKHAKHFILDECDKMLEELDMRRDVQEIFRATPHEKQVMMFSATLSKDVRAIC
KKFMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQR
CMALAQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIV
FNYDMPENSDTYLHRVARAGRFGTKGLAITFVSDENDAKVLNDVQERFEVNITELPDEID
ISSYIEGR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaacgagaacgaagctgaacttttggactacgaggaggaggagaatgaggct
actgccgatggagcaggggatgtacagcaacaaataaagaaagatgttaagggtacatac
gtatccattcacagttctggatttagagattttcttctgaaaccggagctgctccgagcc
attgttgactgtggctttgagcatccctcagaagttcagcatgaatgcatcccgcaagca
attttgtcaatggatgtgttgtgtcaagctaagtctggtatgggaaagacggccgtgttt
gtattggcaactcttcaacagctagagcctgtggatggtcaggtgtctgtgttggtattg
gcacatactagggaacttgctttccaaatcagcaaagagtatgaacggttcagcaagtac
atgaacagcacaaaaatagcagtcttctttggtgggatgtcggttaagaaagatgaagag
gtcctgaaaaagaactgtccacatattgtggtgggaactccagggaggattctagcactt
gtacgatcaaaacagcttgttttgaagcatgcaaaacattttattttggacgaatgtgac
aaaatgttggaagaattagacatgagacgagacgttcaggagatattcagggccactccc
catgagaagcaagtcatgatgttcagtgccaccctcagcaaagatgtccgagcaatctgc
aagaagttcatgcaagatcctatggaagtgtatgtggatgatgattccaagctcaccctt
catggtctacagcagcactatgtaaagctgaaggacaatgagaagaataggaagcttttt
gagcttcttgatgttcttgaattcaaccaggtgataatttttgtcaagtccgtccagaga
tgcatggccctggcacagttgttagtggaacagaacttcccagctattgccatccacagg
gcaatgacacaagaggaaagattatctcgctaccaacagtttaaagatttccagaagaga
attctagtggccacaaacttgtttggacgtggaatggatattgagagagtgaacattgtt
ttcaactatgacatgcctgagaattccgacacatacttacacagagtggcacgtgctgga
agatttggtaccaaaggtcttgccattacatttgtctctgatgaaaatgatgccaaggtg
ttgaatgatgttcaggagcgatttgaggttaacatcacagaactaccagacgagattgac
atctcttcatatattgagggtagatga
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