Ylistrum balloti (Ballot's saucer scallop): 132549788
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Entry
132549788 CDS
T11245
Name
(RefSeq) spliceosome RNA helicase Ddx39b-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03013
Nucleocytoplasmic transport
yba03015
mRNA surveillance pathway
yba03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132549788
09122 Translation
03013 Nucleocytoplasmic transport
132549788
03015 mRNA surveillance pathway
132549788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yba03019
]
132549788
03041 Spliceosome [BR:
yba03041
]
132549788
Enzymes [BR:
yba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132549788
Messenger RNA biogenesis [BR:
yba03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132549788
Spliceosome [BR:
yba03041
]
Complex C
Other components
EJC/TREX
132549788
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132549788
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
ZNHIT3_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
132549788
NCBI-ProteinID:
XP_060069736
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MDPAENSDTELDYIEDPEDETTISKKADLTPGGGMKREYVSIHSSGFRDFLLKPELLRSI
ADCGFEHPSQVQHECIPQAMLSMDVLCQAKSGMGKTAVFVLSTLQQLEPVDGQVSVIVLA
HIRELAFQIADDYRKLSRHLNNVKVAVFFGGIPIKRDEEVLSKNCPHIVIGTPGRILALV
QKGALKLGSIRHFVLDECDKMLEVLGMRKDVQEIFKMTPHEKQVMMFSATLGKESRLVCK
RFMQDPLEVFVDDCSKLTLHGLRQFYVKVTEKEKNRQLMTLLDALEFNQVIIFVKSVQRC
MTLAQLLLEQNFPAITIHSAMKQEERLSRYKQFKEFEKRLLVSTNLFGRGMDIVGVNIVF
NYDMAEDSDTFLHRVARAGRFGTKGMAITFISNEMEAAIMNEVQERFEVNVPVLPDEIDT
SSYLPRK
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggatcccgctgaaaatagcgacactgagctggactatatagaggacccggaggatgag
accacgatctctaagaaagccgacctcacccccgggggcggcatgaaaagggaatatgtt
tctatacatagctccggatttagggatttcctcctgaaaccggaactgctcaggtcaata
gctgactgtggattcgaacatccatcacaagttcagcacgagtgcatccctcaggcaatg
ctatccatggatgtgttgtgtcaagccaagtctggaatgggaaagacagctgtgtttgta
ttgtcaactcttcaacagctagaacccgtagacggccaggtttccgtcatagttttggct
cacatccgagaacttgccttccaaatcgcagacgactaccgaaagttatctcgccatttg
aacaatgtcaaggtggctgtatttttcggaggaattcctatcaagcgcgatgaagaagtt
ttgtcaaaaaactgccctcacattgttataggaactcccggccgtatcttagccctggtt
cagaaaggagcactgaagttgggaagcatccgccattttgtcttggatgaatgtgacaag
atgcttgaagtattaggcatgaggaaagacgttcaggagatattcaagatgacgccacac
gagaaacaagtcatgatgttcagcgcaaccttggggaaggaatcccgtcttgtctgcaag
aggtttatgcaggatccgttagaggtttttgtagatgactgttcaaagttgaccttgcat
ggccttcgtcagttttatgtcaaggtcacagagaaggagaagaacagacaacttatgacg
ctactcgatgctctggaatttaatcaggtgatcatcttcgtcaagtccgttcagagatgc
atgaccctggcacaactgttgttggaacagaacttcccggcgataaccattcatagtgcc
atgaagcaagaggaaaggttatctcggtacaaacagtttaaggaattcgagaagcgcctc
ttggtgtccacaaatctgtttggtcgaggaatggatattgttggtgttaacatagtcttt
aactacgatatggctgaggactctgacaccttcctccatagggtggctagagctgggaga
tttggcacgaaaggcatggcaattaccttcatctccaacgaaatggaggctgccattatg
aatgaagtacaggaaagattcgaggtcaatgtaccggtcttacctgatgaaatcgacacg
tcctcatacctaccgcgaaaatga
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