Ylistrum balloti (Ballot's saucer scallop): 132555656
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Entry
132555656 CDS
T11245
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03040
Spliceosome
yba04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132555656
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
132555656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
yba03041
]
132555656
04121 Ubiquitin system [BR:
yba04121
]
132555656
03400 DNA repair and recombination proteins [BR:
yba03400
]
132555656
Enzymes [BR:
yba01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132555656
Spliceosome [BR:
yba03041
]
Complex B
Other components
Prp19 complex
132555656
Complex C
Prp19-CDC5 complex
132555656
Ubiquitin system [BR:
yba04121
]
Ubiquitin ligases (E3)
U-box type E3
132555656
DNA repair and recombination proteins [BR:
yba03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
132555656
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Prp19
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
DSE1_N
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_Aladin
CFAP251_N
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_NOL10_N
Beta-prop_WDR19_1st
Beta-prop_SCAP
U-box
ASA1
Beta-prop_EIPR1
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_RIG_2nd
NBCH_WD40
PEP5_VPS11_N
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_VPS8
eIF2A
zf-Nse
Alpha_humulene_synt
Beta-prop_Nup120_160
Tricorn_2nd
Beta-prop_ACSF4
Beta-prop_WDR35_TULP_N
RMC1_N
ATG16
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
132555656
NCBI-ProteinID:
XP_060075989
LinkDB
All DBs
Position
Unknown
AA seq
509 aa
AA seq
DB search
MALCCAISNEVPEQPVISSASGHIYERRLIEKYIKENGTDPMNGEKLSTDMLMEIKASPL
VKPRPASATSIPAILKSLQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVSAAREALATLKPQAGVAAPGYTAPPQQPAYGAEANPEAAQQPMEEAGMSDEVLQKL
QDKATLLTAERKKRGKTVPEGLAIVEDIKTYRQLASHTGLHSASVPGILSLDVCLKDTSK
IVTGGNDKNAVVFNKDTEQVMAILKGHTKKVTSVIYHPEEELVFTASPDCTIRVWGVQTA
QCAQVIRAHEAPVTGISLHATGDYLLSSSTDMHWAFSDLRAGRVLTKVNDPASQHALTCA
QFHPDGLIFGTGTEDSMIKIWDLKERANVANFPGHQGPITSIAFSENGYYLATSAEDSVV
KLWDLRKLKNFKTLQLSDKYDVRSLSFDQSGTYLAVAGTDVRVYLCKQWQDLVVFNDHTA
TATGVRFGHNGTFLASASMDRSLKFFGIP
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtgctgtgcaatcagtaatgaggttccagaacaaccagtcatttcttcagct
tctggccacatctatgaaaggcggctgattgaaaaatatatcaaagaaaatggaacagat
cccatgaatggggaaaaactgtctacagacatgctgatggagatcaaagcttcccctctt
gttaagccaagacctgcatcagcaacaagtattccagccattcttaaatctcttcaagat
gaatgggatgctgtcatgttacacagtttcacattgagacagcagcttcagacagccaga
caagaattgtctcatgctctgtaccagcacgatgctgcttgtcgtgtcatcgctcgtctc
actaaggaagtctccgctgccagagaagccttggctactctgaaacctcaggcaggcgtg
gctgctccaggatacacagctcctccccaacaaccagcatatggagcagaagccaatcca
gaggctgcccaacagccaatggaggaggcaggcatgagtgatgaggttctacagaagctg
caagacaaagctaccctacttacagcagaacgaaaaaagagaggtaagactgttcctgaa
ggtttggccattgttgaagacatcaagacttacagacagctggcttcccatacaggatta
cacagtgctagtgtgcctggaattttatctctcgatgtgtgtctgaaggatacatccaaa
attgttactggtggaaatgataaaaatgctgtggtatttaacaaggatacagaacaagtc
atggccattctcaaaggtcacacaaagaaggttaccagtgttatttatcatccagaagag
gagttggtattcactgcctcccctgactgtaccattcgtgtgtggggtgtacagacagcc
cagtgtgcccaggtcattagagctcacgaggctcctgtcacaggcatcagtctccacgct
actggtgactaccttctcagctcatccacagacatgcactgggcattttcagatcttcgt
gccggcagagttctcaccaaagtcaatgatccagcttctcaacatgccttgacatgtgca
cagtttcatcctgatggtttgatctttggcactggcacagaggactctatgatcaagatc
tgggatctgaaggagcgagccaatgtggctaacttccctggtcaccagggtcccataaca
agcattgctttctcagaaaatggttactacttggctacatctgcggaggattctgttgtc
aaactttgggatttgagaaaattgaagaacttcaagactttacaacttagtgacaaatat
gatgtgaggtcactgtcctttgaccagagtggtacctaccttgctgttgcaggcactgat
gtcagagtttacctgtgtaaacaatggcaagatctggtggtgtttaatgaccatactgcg
acagcgactggtgttagattcggacacaatggtaccttcttagcatcagccagtatggat
cgctcactcaaattctttggcataccatga
DBGET
integrated database retrieval system
