Ylistrum balloti (Ballot's saucer scallop): 132556345
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Entry
132556345 CDS
T11245
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03013
Nucleocytoplasmic transport
yba03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
132556345
03015 mRNA surveillance pathway
132556345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yba03019
]
132556345
Enzymes [BR:
yba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
132556345
5.6.2.5 RNA 5'-3' helicase
132556345
Messenger RNA biogenesis [BR:
yba03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
132556345
mRNA cycle factors
Common to processing body (P body) and stress granule
132556345
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
NPHP3_N
NAT10_TcmA_helicase
UvrD-helicase
AAA_16
ATPase
nSTAND3
AAA_22
SRP54
nSTAND_NTPase5
PhoH
Motif
Other DBs
NCBI-GeneID:
132556345
NCBI-ProteinID:
XP_060076718
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MMSVDAYAPNSQTLTFLDTEEDLLGADTQGTDFDFTDFTLPSQTQSQTQASQLEPGQSQS
QQPNGVEIPLQNGLDKGIGVITQGVGELNFEEEEEEQFYMKDLPKHACSYCGIHDPACVV
LCNSTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLG
FIPAKADSVVVLLCRQPCATLTNLKDMNWDPSQWQPLIQDRQFLAWLVKVPSDQEQMRGR
QISAQQINKLEELWKDNPDATLEDLEKPGVDEEPQQVLLRYDDAYQYQNIFGPLVKLEAD
YDKKLKESQTQDNIVVRWDVGLNKKRITYFHLPKANEEMKLMHGDELRIRYMGELHKPWS
GVGHVIKIPDNHSDEVAIELKSNAGVPTDCTHNFVVDFVWKSTSFDRMQAALKTFAVDET
SVWGYIYHKLLGHEVEDVVIKCQLPKRFSALNLPELNHSQVYAVKTVLQRPLSLIQGPPG
TGKTVTSATVVYHLAKQNSGQVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIESP
VSFLSLHNQIRNIESVPELQKLQQLKDETGELSSADEKRYRSLKKQCEKELLQHADVICC
TCVGAGDPRLGKMQFRSVLIDESTQATEPECMIPVILGCRQLILVGDHCQLGPVVMCKKA
ARAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVAPADRTRKNL
DIPWPQADKPMFFYTTSGQEEISSSGTSYLNRTEAVNVEKIATRFLRSSIKPEQIGIITP
YEGQRAYIVQYMQYSGSLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLND
PRRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESLIQFSK
PRKLVNSANPGGRFMSNIMFDAREVLIPGSVYDRTQGYREPAVVRHHDQLSYIGPERAYT
GPALNLPVPVNMFIPPMPQPFNTQQPVHMNNKSNPRQNQRGFNYRQKPPRYSNTQTTQGS
QMSQNGSQSQASQDGISQPFSQGPLTQGPMSMSQSFQMSQPGLSGLSQPELSQDSFLADD
FKSQADGMLSQDSTYQGDRMFYASQLSQGPFN
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgttgacgcgtatgccccaaattcccaaacactcacgttcctggacaccgag
gaagatctcctcggagcggacacacaaggcacagacttcgacttcacagattttacattg
ccctcacaaactcagtcgcagactcaagcctctcagctagaaccaggacagagccaaagt
cagcaacccaatggtgtcgaaataccactacaaaatggcctggataagggtattggagtc
atcacacagggagtgggtgagctcaactttgaggaagaggaagaagaacagttttatatg
aaagatctccccaaacatgcatgctcgtactgtgggatacatgaccctgcatgtgtggtc
ttgtgcaactcaacaaagaagtggttttgtaatggccgcggcaacacttcaggaagccac
atcatcaaccacttggtgagagcgaaagcaaaggaggtgaccctccacaaggatggtcca
ctaggggagacagtgcttgagtgctacaactgtggttgtcgtaatgtgttcttgcttggc
ttcatcccagccaaagctgactctgtagtggtactgctgtgtagacagccctgtgccaca
ctaaccaacctgaaagatatgaactgggaccccagccagtggcaacccctgatccaggat
cgccaatttttagcctggcttgtgaaggtgccttccgaccaagagcagatgcgaggacga
cagatctccgcccagcagataaacaaactggaggagttgtggaaagacaatcctgatgcc
acactggaggatttagagaagccaggagtagatgaggagccccagcaggttctcctcagg
tatgatgatgcttatcagtaccaaaacatctttggtccccttgtcaagttggaggctgac
tatgataaaaagctgaaggagtctcagacccaagataatattgtagtgcgctgggatgtt
ggcctgaacaagaagcgcatcacttacttccatctcccaaaggccaatgaagaaatgaag
ctgatgcatggagacgagttgaggattcgttacatgggagaactacataagccatggtca
ggtgttggccatgtcatcaagataccagacaatcatagtgacgaggtggccattgaactg
aagagtaatgctggggtgcctactgactgtacacataactttgtagtggactttgtctgg
aaatcaacatcatttgacagaatgcaggcagctctgaagacatttgcagtggatgagaca
tcagtgtggggctacatttaccacaaactgttgggacacgaggttgaggatgtggtcatc
aagtgtcagcttcccaaacgcttcagtgccctcaatctgccagaactcaatcactcccag
gtgtacgcagtcaagactgtgctgcaacgtcccctaagtctcattcagggtccaccagga
accggtaagactgttacttcagcaactgtggtttaccatctggccaaacagaacagtggt
caggtccttgtgtgtgctccttcaaacatcgctgtcgaccagctcactgagaagatccat
aggactggactaaaggtggtgcgtctttgtgctaagagtcgtgaagctattgagtctcca
gtctctttcctgtctttacacaaccagatcagaaatatcgaaagtgtaccagagctgcag
aagctgcagcagcttaaagatgagactggtgagctgtcatctgctgatgagaagagatac
cgctccctaaagaaacagtgtgagaaggaacttctacagcatgccgacgttatctgctgt
acatgtgtgggagcaggggacccaagacttgggaagatgcaattccgctcagttctaatt
gatgagagtacccaggccacagaacctgagtgcatgattcctgtgattctaggatgcaga
caactgattctggttggggaccactgccagcttggaccagtggtaatgtgcaagaaggca
gcccgtgctggcttgtctcagtctctgtttgagcgtttggtagtcctaggcattcgacct
atcagactccaagtccagtacagaatgcacccagcactcagcgccttcccctcaaacatc
ttttacgaaggttccttacagaatggagttgctccagctgatcgcacaaggaagaatctt
gacataccttggccacaggcagacaagcccatgttcttctacacgacgtcaggccaggag
gaaatctccagttccggcacctcctatctcaacagaactgaggcagtcaatgtagagaaa
attgcaactcgtttcctgcgatcaagcatcaagccagaacagattggtatcattactcca
tatgagggacagcgggcatacattgtccagtacatgcagtacagtggatctctcaacaag
aaactttatcaggaaattgaagtagctagtgtggatgctttccaaggaagggagaaagac
tttatcattttgtcatgtgtccgatccaacgaacaccagggaattggatttctaaatgat
ccacgtcgtcttaatgtagctttgacgcgggctaagtatgggatcatcatagtcggtaac
cccaaagtcctgtctaagcaacccttgtggaatcacctgttgacatattacaaggagcag
aaatgtctggtggaaggaccactcaacaacctcaaggagagcctgatacagttcagcaaa
ccacgcaagcttgttaactcggccaatcctggtggtagatttatgagtaacatcatgttt
gatgcccgagaagtacttatcccaggaagtgtgtatgacagaacccagggatatcgtgaa
ccagctgtggttcgtcaccatgatcaactgagctacatcggacctgagcgtgcctacaca
ggccccgcccttaatttgccggtacctgtcaacatgttcatacccccaatgccacagcca
ttcaacactcaacaacctgtccacatgaacaacaagagtaatccacgacagaaccagcgt
ggcttcaactaccgccagaaaccacccagatacagcaacacgcagaccacccaggggtca
cagatgagtcagaatggcagtcagagtcaggcaagtcaggatggcatttcccagccattt
tcgcagggtcctttaacccaagggcctatgtcaatgagccagtcgttccagatgagccag
cctggcctctcagggctatcccagccagaactgtctcaggacagtttcctggctgatgac
ttcaagtcgcaggctgatggcatgttgtcccaggactcgacataccagggtgaccgcatg
ttctatgcctcccagctgtcacaaggtcccttcaactag
DBGET
integrated database retrieval system
