Ylistrum balloti (Ballot's saucer scallop): 132556461
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Entry
132556461 CDS
T11245
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yba03016
]
132556461
Enzymes [BR:
yba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
132556461
Transfer RNA biogenesis [BR:
yba03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
132556461
Prokaryotic type
tRNA splicing ligases
132556461
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
132556461
NCBI-ProteinID:
XP_060076853
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRTYQEELGYLEKIGGNAWRIKKGFVPNMNVEGIFYANDSLEKLMFDELKQSCRSQGY
GGFLPGMKQIGNVAALPGIIGKSIGLPDVHSGYGFAIGNMAAFDMGNPEAVVSPGGVGFD
INCGVRLLRTNLMEKDVQPVKEQLAQCIFDHIPVGVGSKGIIPMTAQNLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIYN
EVAARKMGIECKGQVCMMIHCGSRGLGHQVATDALVAMEKAMKRDKIDVNDRQLACARIN
SVEGQDYLKGMAGAANYAWVNRSSMTFLSRQAFSKMFNSSPDDLDMHVIYDVSHNIAKVE
EHFVEGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
GETFGTTCHGAGRALSRAKSRRNLDYTDVLNALEEKGISIRVASPKLVMEEAPESYKNVT
DVVDTCHRAGISQKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtacggacatatcaagaagagcttgggtatttggagaagataggtggtaatgca
tggcgcataaagaaaggctttgttcccaacatgaacgttgaaggaatcttttatgcaaat
gattccttagaaaaacttatgtttgatgaattgaagcagtcctgccgttcacaaggttat
ggaggatttcttcctgggatgaaacaaattggcaatgttgcagctctgcctggaattatt
gggaaatctattggtcttcctgatgtacactccggatatggatttgccataggtaatatg
gcagcatttgatatgggaaatcctgaagcagttgtctcccctggaggtgtgggttttgac
atcaattgtggggttcgacttctaagaacaaatctgatggagaaagatgtccaacctgtc
aaagaacagcttgctcagtgtatctttgaccacataccagtgggtgttggctctaaaggc
atcattccaatgacagcacagaacttagaggaagccttagaaatgggaatggactggtca
ttaagagaaggctatgcttgggctgaagacaaagaacactgtgaggagtatggacgtatg
ttacaagcagaccccaacaaagtcagtgctcgagccaagaaaagaggtctgcctcagctt
ggaactcttggagctgggaatcattatgctgaaatacaagtggtagatgaaatttacaat
gaagtcgcagccaggaaaatgggcatcgaatgcaaaggtcaagtctgtatgatgatccat
tgtggaagtcgaggacttgggcatcaggtagccacagacgcacttgttgccatggagaaa
gcaatgaaacgagacaagatcgacgtgaatgatcggcagttagcctgtgctaggataaac
tctgtagaaggacaagattatctcaaaggcatggcaggggctgctaactatgcatgggtc
aatcgttccagtatgacattcctctcacgacaggctttctctaaaatgtttaacagctct
ccagatgatcttgacatgcatgtgatttatgatgtgtcacacaacattgcaaaggtggag
gaacactttgtggagggtaaacaaagaacattactagtacacaggaagggttcaacacgt
gccttcccacctcaccatccacttatacctgttgactaccagctgacaggccagccagtg
ctaattggaggtacaatggggacttgtagttatgtattgacaggaacagagcaaggcatg
ggggaaacatttggaaccacttgtcatggtgcaggtcgtgctttatctcgagcaaaatct
cgacgtaatctggattacacagatgtcctgaatgcacttgaggaaaaggggataagcatc
cgagtggcttccccaaaacttgtcatggaagaggcaccagagtcgtacaaaaatgtcacg
gatgtagttgatacatgtcatagagcaggcatcagtcagaagtgtataaaactccgaccc
atagctgtgattaaaggttga
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