Ylistrum balloti (Ballot's saucer scallop): 132556772
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Entry
132556772 CDS
T11245
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132556772
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
yba00536
]
132556772
Glycosaminoglycan binding proteins [BR:
yba00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132556772
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
CdsD_C
Motif
Other DBs
NCBI-GeneID:
132556772
NCBI-ProteinID:
XP_060077197
LinkDB
All DBs
Position
Unknown
AA seq
1433 aa
AA seq
DB search
MAFGTVRWSNCILPLLLWVTVTAAQGTAQETCVFNGEILQDGDIVDGLEPCTQCSCELGK
IKCFKTDQCPIDSDNQEVRDSVSESEASGHRGQPGYIGFTGKQGAMGPTGSDGNHGIPGP
PGPPGVPKTQADEAFMHWAQAYPQKAGGFAQGQRYLQANIGPAGPRGPTGPPGQPGPQGL
TGIRGEPGDSGPPGSPGPRGSPGPPGLPGPDGDSGRNGEPGPRGLIGRKGPNGPAGTPGI
PGSKGHRGFHGLSGPPGEQGLPGDKGDTGPPGPAGAPGLQGMRGLAGDRGRDGNDGPAGL
RGVDGLSGAAGAPGPVGNIGPPGIPGRPGTKGGAGAPGPKGAMGLQGQRGDSGEPGPAGE
AGAVGPNGLPGSNGEKGAYGEPGPSGPPGFPGPRGSPGFGGSPGPQGPKGSAGQPGEMGI
KGASGQRGPAGSVGERGIQGPAGHEGKRGQRGVVGETGPAGPQGERGPPGQRGMPGATGE
AGNIGEDGAPGSRGRRGISGPMGEPGRQGAPGNRGSRGPSGMAGLDGVPGRAGNQGVPGN
DGNPGEMGPPGIPGPAGVQGPQGPTGDRGTPGKDGNHGPQGSRGPAGDAGPQGEMGPYGP
PGPIGEAGERGPTGNGGPQGYQGAPGLPGPPGESGKPGEQGEPGNQGRNGRPGSPGERGF
PGEQGEPGVSGEPGKAGPEGPTGRAGERGPPGEQGEKGELGPTGVLGPQGQRGGRGAPGE
QGEPGDPGPPGPDGSTGRSGEPGPPGKPGEVGLPGPTPPKGEPGDPGFDGEKGSRGSPGE
RGPMGLPGADGLTGMPGNAGPAGPKGQQGYPGEKGDQGVVGDAGISGPPGARGQPGLDGA
KGVRGEQGPPGLPGVPGPNGRTGPVGPQGSLGEIGDAGPPGADGIKGQRGMNGHMGYAGE
AGAAGLPGESGQKGVRGEDGNAGPVGPVGPQGSAGDRGQPGIQGIRGERGPMGPPGPPGS
QGSPGREGQDGHPGKAGPRGVAGPPGPVGEPGNIGSPGADGTPGLPGREGEKGPDGDMGM
PGATGLMGFPGPAGPPGSPGPAGERGVRGESGPDGSQGSQGPRGPPGPYGPQGVSGERGD
DGIQGDKGDPGLIGMPGLPGPEGPAGDQGNVGPPGPMGQQGPEGQRGLPGRPGNTGEVGP
PGPMGPRGEQGDDGRSGVMGNSGPPGPPGEPGRSVYSQAISGWFHRSNLKGVQGDEPLTE
EQTNIVAYLDYLGEELMKIIHPRGEEDSPYARTCLDLRMKNPDLTNGLYWIDPDGGVPSN
KIQVFCDFRKRTYTCVQPLYDMYENQPVTKEDGEDYAMFAQKTIKGKELQYKSNRVQLKF
LQKVSSKAIQTIVYKCRNNVAFYDRTADAYNKAIKLVTFDDTDLGAQGRKKYRYKVISDG
CDMAADRWGETVVEVSTKKTERLPIIDVGISDIGKANQEFKIEVGPVCFSHES
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcatttggaacagttcgatggtcgaactgtatactcccattattgctatgggtgaca
gtaacagcagctcaaggtacggctcaagagacatgcgtatttaacggagagattcttcaa
gatggagacatagttgacggattagaaccatgcacacaatgtagttgtgaattgggaaag
atcaaatgttttaaaacggatcaatgtcccatcgatagtgacaaccaagaagttagagat
tcggtcagcgagagtgaagcttctggacaccgaggacagccaggctatatagggttcacg
ggtaaacaaggagctatgggacctacaggatccgatggaaatcatggtatcccagggccc
ccaggaccacccggcgttcccaagacgcaagccgatgaagcatttatgcactgggctcag
gcctacccccaaaaggcaggcggatttgcccagggacaacgataccttcaagctaatatc
ggaccagctggacctcgtggaccaacaggacccccaggacagccgggaccacaaggtttg
accggaattcgcggagagccaggtgattccggaccccctggatcacctggaccacgagga
tctccaggacctccagggttacccggaccagatggagattctggacgtaatggcgagcca
ggaccacgtggacttatcggaaggaagggacctaacggaccagctggaactccagggatc
ccaggatcaaaaggacatcggggtttccatggtttgtcgggacctcctggagaacaggga
ttaccaggtgataagggagataccggtcccccaggacccgccggtgccccaggtctccaa
ggaatgcgtggtttggccggagacagaggaagggatggaaatgatggaccagcgggtctg
agaggagttgatggactttcaggagctgcaggtgctcctggtcccgtcggaaacatcgga
ccaccaggaattcctggacgtccagggacaaagggaggtgcaggagcccctggccccaag
ggagccatgggacttcaaggacaacgcggagatagcggagaaccaggaccagcaggggag
gcgggagccgtcggacccaatggtcttcccggaagtaacggcgagaagggagcttacggt
gaacccggaccttccggtcccccaggatttccaggacctcgtggttccccaggatttggt
ggaagtccaggaccccagggaccaaagggatcagcgggtcaaccaggagaaatgggcatt
aagggagcttcaggacagcgtggtcctgcaggatctgttggagagaggggcatccaagga
ccagctggacacgagggaaagaggggacaacgtggagtagttggagagacgggaccggca
ggaccccagggtgagcgaggaccaccaggacaacgagggatgccaggagctactggtgag
gcaggaaacattggagaagatggagctcctggatcaaggggtcgtcgtggaatcagtgga
ccaatgggagaacccggacgtcagggagcaccaggaaatcgaggatccagaggaccttca
ggtatggccggattagatggagttccaggacgagctggaaaccaaggagttcccggcaat
gacggaaaccctggagaaatgggaccaccgggtattcctggcccagccggtgtccaagga
ccacaaggaccaacaggagataggggtactccaggtaaagacgggaaccatggtcctcaa
ggtagccgaggcccggctggagatgctggaccccaaggagaaatgggaccgtatggaccc
ccaggaccaataggagaggctggcgagagaggaccaactggaaacggcggcccacaagga
taccagggtgcaccaggattgcctggaccacccggtgagtcaggaaaacctggagaacag
ggagagcctggtaatcagggcaggaatggacgtcccggatctccaggagagagaggattc
ccaggagaacagggagaaccaggagtttctggcgaaccaggaaaagctggaccagagggt
ccgactggaagggctggagaaaggggacctcccggagaacaaggtgagaaaggagagctc
ggaccaactggagtattgggacctcaaggacagcgaggaggacggggagcgccaggagaa
cagggagagcccggtgaccctggaccacctggccctgacggatctaccggacgttctgga
gagcctggaccaccgggaaagccaggagaggtcggactacccggaccaactccaccgaag
ggagagcccggagatccaggatttgatggagaaaagggatcgcgaggatctcctggagag
agaggtcctatgggattgccaggtgcagacggattaactggcatgccaggtaatgcagga
ccggctggtccaaagggacaacaaggatatcctggagaaaaaggtgatcaaggagtagtt
ggagatgccggaatctccggacctcctggagctaggggtcaaccaggattagatggagcc
aagggtgtacgaggagaacaaggacccccgggtcttccaggtgtaccaggaccaaatggc
cgtacaggcccagtgggacctcaaggcagtcttggagaaattggtgatgccggaccacct
ggcgctgatggaatcaagggacaacgtggaatgaatggacatatgggctatgcaggtgag
gctggagctgctggattacctggagagtctggacagaagggagtacgcggagaagatgga
aatgcgggaccagttggaccagttggacctcagggatcagctggcgacagaggacaaccc
ggtatccaaggaatcagaggagagaggggccccatgggacctcctggaccacctggcagc
caaggatctcccggacgtgagggtcaagatggacatccaggaaaggctggaccaaggggt
gtggccggacctccaggaccagttggagaacctggtaacataggttcccctggtgcggat
ggtacccctggacttccaggaagagaaggagaaaagggaccagatggcgatatgggcatg
cctggggctactggtctgatgggcttcccaggacccgctggacccccagggtcaccagga
cctgccggagagcgaggtgtcagaggcgagtcgggaccagatggatcccaagggtctcaa
ggaccacgcggaccaccaggcccatacggaccacagggagtatcaggagaaaggggagac
gacggaattcagggtgacaagggagaccctggtctgattggaatgccaggacttcctgga
ccagagggacctgcaggtgaccaaggaaatgttggacctccgggacctatgggacaacag
ggacccgaaggacaacgtggacttcccggtagaccaggtaacactggcgaagtcggacct
ccaggacctatgggaccacgtggagagcaaggagatgacggtcgatctggtgtgatggga
aattctggtccaccaggacccccgggagagccagggcgatccgtttacagccaggcaatt
tctggatggttccatcgctctaacctgaagggagtgcagggagacgaacctttgactgaa
gagcaaaccaacattgtggcttatcttgactatcttggagaggagttgatgaaaattatt
catccacgtggagaggaggattccccttacgccaggacctgcctggatctccgcatgaag
aacccagatttaacaaacggtctttattggatcgatcctgatggcggtgtaccttctaac
aagatccaggtcttctgcgacttcaggaagaggacatacacatgcgtgcagccattgtat
gatatgtacgagaatcagccagtaacaaaggaggacggagaggactatgctatgtttgcc
caaaagacaatcaagggcaaagagctacagtacaagtccaacagggtacagctgaagttc
ctgcagaaggtcagctctaaggccatccagacaattgtgtacaagtgcaggaacaatgtt
gccttctatgaccgtactgcggacgcctacaacaaggccatcaaactcgtcacatttgac
gatactgaccttggtgcgcaaggcaggaagaagtacagatacaaggtcatcagtgatggt
tgtgatatggctgccgacagatggggagagaccgtggtagaggttagcaccaagaaaaca
gagagactgccaattattgatgtaggcatcagcgatattggaaaagcaaaccaagagttc
aagattgaagtgggacctgtgtgtttctctcacgaaagttaa
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integrated database retrieval system
