Ylistrum balloti (Ballot's saucer scallop): 132557147
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Entry
132557147 CDS
T11245
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03008
Ribosome biogenesis in eukaryotes
yba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
132557147
09123 Folding, sorting and degradation
03018 RNA degradation
132557147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yba03021
]
132557147
03019 Messenger RNA biogenesis [BR:
yba03019
]
132557147
03009 Ribosome biogenesis [BR:
yba03009
]
132557147
03016 Transfer RNA biogenesis [BR:
yba03016
]
132557147
Transcription machinery [BR:
yba03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132557147
Messenger RNA biogenesis [BR:
yba03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
132557147
Ribosome biogenesis [BR:
yba03009
]
Eukaryotic type
Pre-60S particles
RNases
132557147
Transfer RNA biogenesis [BR:
yba03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
132557147
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
132557147
NCBI-ProteinID:
XP_060077621
LinkDB
All DBs
Position
Unknown
AA seq
955 aa
AA seq
DB search
MGVPAFFRWLSKKYPSIIVNCIEQKAKEVDGQKIPVDTSQPNPNDYEFDNLYLDMNGIIH
PCCHPEDKPAPKNEDEMMVLIFEFIDRIFAIVRPRKVLYMAIDGVAPRAKMNQQRSRRFR
ASKETIEKKEEMAEMRAQLEAKGCSLPPPKPPGEHFDSNCITPGTPFMFKLAECLIYYIY
DRLNTDPGWQNIKVILSDANSPGEGEHKIMDFIRKQRAQPDHDPNTKHCLCGADADLIML
GLATHEPHFTIIREEFKPNQPKPCELCGQIGHEMKECAGLPKEKKGKGDEVKPFVGEEQQ
YIFVRLNILREYLERELVMDTLSFPYDFERALDDWVLMCFFVGNDFLPHLPSLEIREGAI
DRLQRLYKDCVRKTGGYLTENGVLNLSRVQLVLSDLGEVEDEIFKSRRSKEMYFRQRDRE
NKLRAKRMQEGPKWIPGGALTPQPLGHSHSSRDSRGYSSRDVSNADAAQALKAMMRNPEK
AGDDKKKEEEEEDPEPPDDVKLWEAGWKDRYYRNKFNVGSDDIAFRQNVANHYVRGLCWV
LRYYYQGCPSWKWYFPYHYAPFASDFINIGELSNSFEANTEPFKPLEQLMGVFPAGSKEH
LPVTWQRLMTDPESPIIDFYPVDFKIDLNGKKYAWQGVALLPFVDEKRLLSALATVYPDL
TSGERKRNTKGSDRMFVGIRHPIYTFFEGLYEGTMTVEPVDMDPKSAQGLAGKVWCDESA
VMTGGTVMCPVPTLHDTPDNRAIGVHYLDPVYEQGYIYKAKILPGAKMPPRVLKPEDFNK
NKPWKPWVPQIGMSRGGSSNRGARDIDSALRMIRHGVGGGGGQDQRGSWNRGDNRSHGGP
PSLLSMGGNMGYGGRGPPGGGGGGYNQGFGGGRGQHFDSRNRGYNNNNVGNCSNQGGNHG
NWRGGYGNQGGNYGNQRGGYGGGHGNYGDNRRDNNRGGYPHHQPRSYKQHRSHPY
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgggagttcctgcattcttccgatggttgagcaagaagtatccttcaatcattgtgaat
tgcatcgaacagaaggcgaaagaagttgatggtcagaagataccagtggataccagccag
ccaaatccaaatgactatgaatttgacaatttataccttgacatgaatggaatcatccat
ccttgttgtcatcctgaagacaagcctgctcctaagaatgaagatgaaatgatggttttg
atttttgagttcatagacagaatctttgctattgtgagacctagaaaagttttgtatatg
gcaattgatggtgtggcaccacgagcaaagatgaaccaacaaaggtcaaggagattcagg
gcctcgaaggaaaccattgagaagaaagaggagatggctgaaatgcgagcccagcttgaa
gccaaaggctgcagtttacctcctcctaagcctccaggggagcattttgacagtaactgt
attacaccgggcacaccattcatgttcaaactggctgagtgtctgatctactacatctac
gacagactgaacacagatcctggatggcagaacattaaggttatcttgtctgatgcaaac
agtccgggggagggggagcacaaaattatggacttcattaggaaacagagagcacaacca
gaccatgacccgaacaccaagcactgcctttgtggggctgatgctgatttaattatgttg
ggtttggctacacatgaacctcatttcactatcatcagagaagaatttaaacccaatcag
ccaaaaccgtgtgaactctgtggacaaattggtcatgaaatgaaagaatgtgcaggttta
ccaaaagaaaaaaaaggaaaaggagatgaggtgaagccttttgtaggagaagaacaacag
tacatctttgtaaggttgaatatactacgggaatacctagagcgtgaacttgtcatggat
actctctcatttccgtacgattttgagcgggcattggatgactgggtcctcatgtgtttc
tttgttggtaatgactttttgcctcatctgccgtcattagaaatcagggaaggagctatt
gatagacttcaacgcttgtacaaagattgtgtcagaaagactgggggttacctaacagag
aatggtgtgttgaacctcagtcgggtacagttggttctgtcagatctgggtgaggtagaa
gatgaaattttcaaaagcagaagaagcaaagagatgtacttcagacagcgtgaccgagaa
aataagctgagagccaaaagaatgcaggaaggaccaaaatggattccaggtggagcgctt
acccctcagcctctaggacactcccactcatcaagggattccagaggatacagcagtcga
gatgtctcaaatgctgatgcagcacaggctctcaaggccatgatgagaaatccagaaaag
gctggtgatgataagaaaaaggaagaggaagaggaagatccagagcctccagatgatgta
aagttatgggaagctggctggaaggatagatattacaggaacaagttcaatgtaggcagt
gacgacatagcattccgacaaaatgttgcaaaccattatgtccgaggtctatgctgggtg
ctgaggtattattatcagggttgtccctcctggaagtggtatttcccttatcactatgca
ccattcgcatccgacttcatcaacattggagaattgtcaaattcatttgaagcaaacaca
gaaccatttaaacctttagaacagttgatgggtgtatttcccgctggtagtaaagaacac
cttccagttacctggcaacggctgatgactgaccctgaatcaccaattattgacttctat
cctgttgactttaagatagatctgaatggaaagaaatatgcctggcaaggtgttgcctta
ctaccgtttgtggatgagaaaaggctcctgtctgccttagctactgtgtatcctgacctt
acaagtggagagaggaagagaaataccaaagggagcgacaggatgtttgttggtattcga
caccctatctacacattctttgagggtctatatgagggcacaatgactgtagagccagta
gatatggatcccaagtcagctcaaggacttgcaggcaaagtgtggtgtgatgaatctgct
gttatgactggagggactgttatgtgccctgtgccaacattacatgacactccagacaac
agagccattggagtgcactatttagacccagtgtatgaacaaggctacatctacaaggct
aaaattctgcccggggcaaagatgcctcctcgtgttcttaagccagaagactttaataag
aacaagccctggaaaccatgggttccccagattggaatgtctcgagggggatcatcaaac
cgtggagctagggatatagacagtgccctcaggatgatcagacatggtgtgggtggtgga
ggtggacaggaccagagaggttcttggaataggggagacaacagatcacacggaggtcca
ccatctcttctctcaatgggtggaaatatggggtatggagggagagggccaccaggagga
ggaggaggtggctataatcagggatttggtggagggagaggtcagcactttgactctcgc
aatagaggttacaataacaataatgttggcaactgcagtaaccaaggagggaaccatggt
aactggagaggtggctatggcaaccaaggaggcaactatggaaaccagagaggtggctat
ggaggtggacacggcaactatggtgacaacaggagggataataaccgaggtggctatcct
caccatcagccaagatcttataagcagcaccgatcccatccctactag
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