Ylistrum balloti (Ballot's saucer scallop): 132562937
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Entry
132562937 CDS
T11245
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132562937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yba03021
]
132562937
03019 Messenger RNA biogenesis [BR:
yba03019
]
132562937
Transcription machinery [BR:
yba03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
132562937
Messenger RNA biogenesis [BR:
yba03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
132562937
U7-dependent histone pre-mRNA processing factors
132562937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
132562937
NCBI-ProteinID:
XP_060083695
LinkDB
All DBs
Position
Unknown
AA seq
1346 aa
AA seq
DB search
MAGEHRRSTVAQFFEEEDDAALESTSTYDRVVDLINKASLMQKDAQKINNLKQVQELIIH
KEPNLLDNFLDEMLAFQSDRTVEVRKFVISFMEEACKKDRELLPKILPCLQLLLEDENVN
IQKKVILVMSQVYKCVLQWMCNAKGISDERTYVWEMVKSMKAKILEMADSENDGVRTHVV
KFLEGMVMILSVTTPDSEFPKNFKAETDINLSIIPEDSDNKYLKVKRMEDEGRNIFETML
HFQASAHISSINLMTVMGSITAIAKQRPTFFGKVVQAFESLQVNLPPTLAKSQVSSVRKN
LKMHMLSLLRHRCSGDYMTQITTLLTDLGATNSEVMKAMPKIDESKKRKAEESTQVAKKA
KIEEVEIDDDDVGMTPFVDRTTTKAPPTVKQQSTAIDITSEDLESRLSTQNVADLVLISM
VMLPDTMPAHFQSTYTPIAAAGTEGQIKHIARLLSTQLTTAGMGKGVAETQAQTEEDEEA
GGESPAYQPSSPKQLIQTVVGGLTDDLPALASSSKSMQPPPAPVRRGIKQFKLSSVTQEL
NRDDLDQMTISAVGRILSAEKSATQGNVLPARTKLLAGLTSQFGGELRDLLEEYIFEDLR
SRFDLAFAWLYQEYANCMGFCAPLMKLEKPSLASYDECLTRLLNGLLTRVELKEGFFQRV
LIEAPAVTDNAILILKKYCLDENRVVAGMNTLKELILTRPVHRHRFLNVMLESCSHDKPE
VRTTAIRFTKKLYEKPQIATHIEDYASKMLKYLLLPKPPSEMFPRSRSGDLPQSWIEDII
KMCLYLYLGLLPSNHKLIHELAVVYTSATADIKRTILRVLENPVKGMGMQSPELLLLVEN
CPKGAETLVTRVIHILTDKAAPSPELVERVRDLYHKRVPDVRFLIPVLTGLHKREVILAL
PKLIKLNPVVVKEVFNRLLGGHGETSFTSPLTPAELLISLHNIDPNKCDMKTIIKATNLC
FSEKNVYTQEALAVVMKTLMEQSPLPTLFMRTVLQSLSMYPRLLGFVLNILQRLITKQVW
KQKRVWEGFIKCCQRTKPQSFQVLLQLPSLQLKSVFESCPELREPLLNHVKSFTEHQITH
IPKAIMTVLEKDPLEEQQKQAQKENMAAEARRMAEAKNSSGPPEILVQVRQEPMEMQVIQ
TVGTVSHDQQAAEKAKQDAERRKTEQAKREAEDREREALAKKAAQEKAEAEEKARIAAEQ
KAERQRLEAVRAAEAEAMVARALADVEMADEDPDSPENALAIAEDELMDMSQTSESAELS
QDTEEEEKPAGETEEEEAVEEGETIEEGETVEEGEAVEEGEAVEEEEEEVKTTKSKMVRR
GRAKASSRSASKSTSAPVRKSSRTKR
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atggctggagaacatcgtagatcaaccgtggcgcagttcttcgaggaggaagatgatgca
gcactggaaagcacatctacatatgacagggttgttgatcttatcaacaaggcttctttg
atgcagaaggatgcccagaaaataaacaatctgaaacaggtacaagagctgattattcat
aaggagcctaatttattagacaattttctagatgaaatgctggcattccagagtgataga
acagtagaagtgagaaaatttgtcatcagctttatggaggaagcatgtaagaaggacaga
gagttgctgccaaagatccttccctgtttgcaactattgttggaggacgagaatgtcaac
atccagaaaaaagtcatcctggtcatgtctcaagtttacaaatgtgtcctccagtggatg
tgtaatgccaaaggcatcagtgatgagaggacttatgtgtgggagatggtcaaaagtatg
aaggccaaaatactggagatggcagattcagaaaatgatggtgtgaggactcatgtggtg
aaattcttggaaggcatggtgatgatactttctgtaacaacaccggattctgagtttcca
aagaatttcaaagcagagactgacatcaacctaagcattattccagaagatagtgacaac
aaatatctcaaggtcaaacgtatggaagatgaaggcagaaacatttttgagactatgtta
cacttccaagcttctgcacacatatctagcatcaaccttatgaccgttatgggcagtata
actgccatagccaagcagaggccaacattctttggcaaagttgttcaggcatttgaatct
cttcaagtaaacttgccaccaacactggccaagtcccaagtgagcagtgtaaggaaaaac
ctgaagatgcacatgttgtcgttgctgagacatcgctgctctggtgactacatgacacag
atcacaactctcttgacagatctgggtgccacaaactctgaggtgatgaaggccatgccg
aaaatagatgaaagcaagaagaggaaagctgaggagtccacacaagtggccaaaaaagcc
aaaatagaggaggtggagattgatgatgatgatgttggtatgacaccatttgtggataga
acgacaacaaaggctcctcctacagttaaacagcagtcaacagctattgacatcacctcg
gaagacctggagtctagactcagcacacagaacgtggctgatcttgttctcatcagtatg
gtgatgttaccagacaccatgccagcccactttcagtccacctacacccctatagctgct
gctggcactgagggacagatcaagcacatagcaaggcttctgtccacccaactcaccact
gctggcatgggcaaaggagtggctgaaacacaagcacagactgaagaagatgaggaggca
ggtggtgaatctccagcctatcagccatcctctccaaaacaactaatacagacagttgtg
ggaggattaacagatgatttaccagcacttgccagctctagtaaatcaatgcagcctcca
cctgctcctgttcgtcgtggcatcaaacaattcaagttaagtagtgtgacccaggaactt
aatcgggatgaccttgaccaaatgactattagtgctgtgggcaggattctcagtgcagaa
aaaagtgctacacaaggcaatgtcctgccagccagaaccaagctattagctgggcttaca
tcacagtttggcggagagctcagagatcttcttgaggaatacatcttcgaagacttgcgg
tcgagatttgatttagcatttgcctggctttaccaggaatatgctaattgtatgggcttc
tgcgccccgttgatgaaactggaaaaaccatccctggcaagttatgatgaatgtctcacg
cgacttctaaatggtctactgactagagtggaactaaaggaagggtttttccagcgagtg
ttgatcgaagctccggctgtgacagacaatgctattctgatattgaagaagtattgtttg
gatgagaatcgtgtggtggcaggtatgaacacactaaaggaacttatcctgacacgacct
gttcaccgacatcgctttctcaacgtcatgctggaatcatgttcacatgataaaccagag
gtgagaacaacagctatccgcttcaccaagaaattgtatgagaaaccgcaaattgctaca
catatagaggactatgcctctaagatgttgaaatatctacttctgcctaagccgccgagt
gaaatgtttcctcgatccagatcaggtgatttgccacagtcttggattgaggacatcatt
aaaatgtgtctctacctatatctaggtcttctgcccagcaaccacaaacttatccatgaa
ttggctgttgtatacacatctgcaactgctgatataaagaggacaattcttcgtgtgtta
gagaacccagtgaaaggtatgggaatgcagtctccagaactccttttgcttgtggagaac
tgtccaaagggtgcagaaactctggtgacccgagtcatacacatcctaacagataaagct
gctccatcaccagagcttgtggagagagtacgagatctgtaccacaaacgtgtgcctgat
gtccgcttccttattcctgtactcacaggcttacacaagagagaagtgatactggctctg
cccaaacttatcaaactgaacccagtggtagttaaggaagtattcaacagactgctggga
ggccatggtgaaaccagtttcacatcccccctcacaccagctgagctgttaatctccctc
cacaacattgatcccaacaagtgtgatatgaagacaatcatcaaagctaccaacctgtgt
ttttcggagaagaatgtctacacacaggaggccctggctgtggtgatgaagactctgatg
gaacagtcacctctacctacgctgtttatgaggacagtgttacagtctctgtctatgtac
ccacgtctcttaggctttgtacttaacattctacagaggttgattaccaaacaggtttgg
aaacagaaacgtgtttgggaaggcttcatcaaatgctgtcagagaaccaagccccagtcc
ttccaggtcctgctgcagcttccatcactccagttgaaaagtgtttttgagagctgtcca
gaattacgtgaacctctactcaatcatgtcaaatccttcacagaacaccagatcacacat
atacccaaggcaatcatgactgtcctggagaaagaccctctagaggagcagcagaaacaa
gcccaaaaggagaacatggcagctgaagccaggagaatggctgaggcaaagaatagctca
ggccctcctgagatcctggtacaggtcagacaggaaccaatggaaatgcaggtaatacag
acagtcggtacagtttcacatgaccagcaggctgctgagaaagccaaacaggatgctgaa
aggaggaaaacagagcaagctaaaagggaagcagaagatagagagagggaggcattggct
aaaaaggctgcccaggagaaagctgaggcagaggagaaggcgagaattgctgcggagcag
aaggcagagaggcaacgactggaggcagtgagagctgcagaagctgaagccatggttgcc
agagctttggcagatgtagagatggccgatgaggacccagactcgcctgaaaatgccctg
gccatagcagaggatgaactcatggacatgtcccagacctcagagtcagcagaactgtca
caggatacagaggaagaggagaaacctgctggtgagacagaggaggaagaggcagtggaa
gaaggggagacaattgaggagggagaaactgtggaagaaggggaggcagttgaggagggt
gaggctgtggaggaggaggaagaggaagtcaagaccacaaaatcaaaaatggttcgtcgt
ggtagagcaaaagcatcctcacggtcagcaagcaaatcaacctcagcacctgtaaggaaa
agttccaggacaaagagataa
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