Ylistrum balloti (Ballot's saucer scallop): 132563475
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Entry
132563475 CDS
T11245
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
yba Ylistrum balloti (Ballot's saucer scallop)
Pathway
yba03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
yba00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132563475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yba03019
]
132563475
03041 Spliceosome [BR:
yba03041
]
132563475
Messenger RNA biogenesis [BR:
yba03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132563475
Spliceosome [BR:
yba03041
]
Complex B
Other components
Prp19-related factors
132563475
Complex C
132563475
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_19
TPR_12
TPR_8
PPR
ARM_TT21
DHR-2_Lobe_A
Motif
Other DBs
NCBI-GeneID:
132563475
NCBI-ProteinID:
XP_060084216
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MIMPEKKESQKDIFFEDEDLPYEEDILRNPFSVKCWLRYIEHKKGAPKNAINLVYERALK
ELPGSYKLWYNYLKIRRRQCKGHCITEPLYEDANNAHERALVFMNKMPRIWLDYCQFLVD
QCKVTKTRRTFDRALRALPITQHHRVWPVYLKFVCKYNLQETTVRVYRRHLKLQKENTEA
YIEYLKSIDWLDEAATRLVNIINDETFVSKEGKSKHQLWNELCELVAKNPDKVTSLKIEP
IIRQGLKRYTDQIGVLWNSMADYYIRGGHFERARDIYEEAIQTVITVRDFTQVFDAYAQF
EKNVIGAEMETMEEKGASEEDDLNLELRLARLEGLMDRRPLLLNSVLLRQNPHNVHEWHK
RVKLYEGKPREIINTYTEAVQTVDPKQASGKPGTLWVEFAKFYEAAGQIEDARVIFDKAV
KVPYKHVDDLATVTCEWGEMEIRHENYEEALKLMQKTTVPPPRKVAYHDESETVQDRVHK
SLKVWSMYADLEESFGTFKTCKAVYDRIIDLRIATPQIIMNYGLFLEENNYFEEAFKAYE
KGIALFKWPNVYDIWNTYLSKFIERYGGSKLERARDLFEQCLENCPPKFAKAIFLLYAKL
EEEHGLARHAMAVYDRATKGVLPEEQAEMFNVYIKRAAEIYGVTYTRPIYEKAIEVLPDE
HSREMCMRFADLERKLGEIDRARALYSHCTQMCDPRVAPHFWQVWKEFEIKHGNEDTVRE
MLRIKRSIQAMYNTQVNFMSSQIMAAQSGGKTDTPETSNPEIDSMKKLEERARQLAEEAM
KDQAKPDKGILFVRSNTTDEELGEMTKTANPDAIDIDDFSSDDEENIEELEVQKQSVPSE
VFGSLANEDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgataatgcctgagaaaaaggaatcacagaaagacattttcttcgaagatgaagatctt
ccatatgaagaagatatcttgcggaatccattttcagtgaagtgctggttgcgatatatt
gaacacaagaaaggtgcccctaaaaatgcaattaacttggtatatgagcgagcattaaag
gaacttccaggaagttataagctgtggtacaactatctaaagatccgtcgacggcagtgt
aagggccattgcatcactgaaccattgtatgaggatgccaataacgcacacgaacgagcc
ttagtgttcatgaataagatgccccggatttggctggattattgccagttcctagttgac
cagtgtaaagtgaccaaaactcgacgcacatttgacagagctttgagggctcttccaatt
acccaacatcaccgagtttggcctgtctacctcaaatttgtgtgtaaatacaacctacag
gagaccactgtccgtgtgtacaggcgtcacttaaagcttcagaaagagaatacagaagca
tatatagaatacctaaaaagtatagattggttggatgaggcagcgacacgcttagtgaat
atcattaatgatgaaacatttgtgtctaaagagggcaaatctaaacatcagctgtggaat
gagctatgtgagttggttgcaaagaatcctgacaaggtgacatccctgaagattgagcca
atcattcgtcagggtctgaagcgttacacagatcagataggggtgttgtggaactctatg
gctgattactacatcagaggtggacactttgagcgggcaagagacatttatgaggaggcc
attcagacagttattacagtccgtgacttcacacaagtgtttgatgcttatgctcagttt
gaaaaaaatgttattggtgcagaaatggaaacgatggaggagaaaggagcttcggaagaa
gatgacctcaatcttgagttacgtttagccaggttggaaggtctgatggacagaagacca
ttacttctaaatagtgtccttcttcgacaaaatccacacaatgtccatgaatggcacaaa
agggtgaaactgtacgagggcaaaccaagggagataatcaacacttacacagaagcagtt
cagacagtcgatccaaagcaggcctctgggaagcctggcacactgtgggtagagtttgcc
aaattctatgaggcagcaggacaaatagaggatgcacgtgtgatatttgacaaagctgtg
aaggtgccttacaaacatgtagatgacctggccacagtcacctgtgaatggggagagatg
gaaattcgacatgaaaactatgaagaagccttgaaattgatgcaaaaaactacagtacct
ccaccgcggaaggtggcctatcatgatgagagtgagacagtgcaggaccgggtacacaaa
tccctgaaagtttggtctatgtatgctgaccttgaagaaagctttggtacatttaaaacc
tgtaaagctgtgtatgatagaatcattgacctacggatagcaactcctcagatcatcatg
aactatggcctgtttttggaggaaaacaactactttgaggaagcattcaaggcctatgag
aaaggtattgctctgttcaagtggcccaacgtttacgacatctggaatacatatttgtcc
aagtttattgaaagatatggagggtctaaactcgagagagcgagggacttatttgagcag
tgcctagaaaattgtccaccaaaatttgcaaaagcaattttccttctgtatgccaaattg
gaagaggagcatgggttggcacggcatgccatggctgtgtatgatcgggcaactaaagga
gtgttgcctgaagaacaggcagagatgtttaatgtgtacataaaaagagcagcagagata
tacggtgtgacatacacaagacctatctacgaaaaggccatagaggtcctgccagatgag
cattcgcgagagatgtgtatgaggtttgcggatctcgagagaaaacttggcgagatcgat
agagcaagggcgctatactctcactgcactcagatgtgtgatcctcgggtagcaccacac
ttctggcaggtttggaaagagtttgagattaaacatggcaatgaggacacagtgcgggaa
atgttgagaattaaacgcagcatacaggccatgtacaacacacaggtcaacttcatgtcc
tcgcaaattatggccgcacaaagtggaggaaagacagatactccagaaacctcaaatcca
gagatagatagcatgaagaagttagaggaacgtgctcggcagctggcagaggaggcaatg
aaggaccaggctaaaccagacaagggcatcttgtttgtcaggagtaacaccacagatgaa
gagctaggggagatgacaaagacagctaatcctgatgcaattgacatcgatgacttttct
agtgatgatgaagaaaatattgaagaattagaagtgcagaaacagtctgttccatcagaa
gtgtttgggtctctggcgaatgaagacgactga
DBGET
integrated database retrieval system
