Yersinia canariae: F0T03_02790
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Entry
F0T03_02790 CDS
T06446
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yca
Yersinia canariae
Pathway
yca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0T03_02790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yca03019
]
F0T03_02790
03009 Ribosome biogenesis [BR:
yca03009
]
F0T03_02790
Enzymes [BR:
yca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F0T03_02790
Messenger RNA biogenesis [BR:
yca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F0T03_02790
Ribosome biogenesis [BR:
yca03009
]
Prokaryotic type
rRNA helicases
F0T03_02790
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHB31219
UniProt:
A0A857EXJ3
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All DBs
Position
577616..579586
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AA seq
656 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTALGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIDPELKAPQVLVLAPTRELAIQVAEALTSFSKDIKGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSGLKGLVLDEADEMLRMGFIEDVENILAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQVYWKVGGGYRKNEALVR
FLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NIERTMKLTIPEVQLPNAELLSERRLAKFAAKVSQQLESSDLDMYRALLAKLQPEEEFDI
ETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGSDRGDSRRDSRREPRSDSRDGG
ERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIE
LPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGGRSFGGERR
DATAGAPPRRSFGSDRAPAGGGEQRRGNRDGQRSAAPRRDDAAAPAAPARRRFGDA
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatttggggctgtctgctcctattctttcc
gcccttactgctttgggttacgaaaaaccatctccaattcaattggaatgtattccacac
ctgttgaacggtcgcgatgttcttggcatggcgcaaaccggtagcggtaaaactgctgct
ttcggacttccgctgctgcacaacattgacccagaactgaaagcaccacaggtgctggta
ctggctccaacccgtgagttggcgattcaggttgctgaagcattaactagcttctctaaa
gatattaaaggcgttaacgttgtggctttgtacggtggccaacgttatgacgtccaatta
cgcgctttgcgtcaggggccacaagttgttgttggtaccccaggtcgtctgttagaccac
ctgaaacgcggtacccttaacctgtccggcctgaaaggtttagtgttggacgaagcagat
gaaatgctgcgtatgggctttatcgaagacgtcgaaaatattctggcacagatcccggct
gaacatcagaccgcgctgttctctgctaccatgccagaagccattcgccgtattactcgt
cgctttatgaaagagccacaggaagttcgtatccagtctagcgtgacgactcgccctgac
attagccaagtgtattggaaagttggcggcggttaccgtaaaaatgaagcactggtacgt
ttcctggaagctgaagatttcgatgccgcgatcatcttcgttcgtactaaaaatgccact
ttggaagttgcagaagccttggagcgtagcggttatagcagcgctgcactgaatggcgat
atgaaccaggcactgcgtgagcagactctggaacgtctgaaagatggccgtttagatatt
ctgatcgcaactgacgttgctgctcgtggtctggacgttgagcgcatcagcttggttgtt
aactatgatatccctatggattcagagtcttacgttcaccgtatcggtcgtactggccgt
gcaggtcgtgcaggtcgcgcgttactgttcgttgagaaccgtgaacgtcgcctgttgcag
aacatcgaacgtaccatgaagctgactattccagaagttcagttgccaaacgcagaattg
ctgagcgaacgtcgtttagctaaatttgcggcgaaagtcagtcaacaactggaaagcagt
gatttggatatgtaccgtgcattgttggctaagctgcaaccagaagaagagtttgatatt
gagactctggctgctgcgctgctgaaaatggcacagggcgaacgtcctctgatcttgcca
ccggaagcgccgcgtcgtccacagcgtgaattcaattctcgtgacgaccgtggtagtgat
cgtggtgatagccgtcgtgacagccgtcgtgagcctcgctctgacagccgtgatggtggc
gagcgtccagcacgtcgcgaacgtcgtgatgtgggtgagatggaactgtatcgcattgaa
gtgggccgtgatgatggtgttgaagttcgtcatatcgttggcgctatcgctaatgaaggc
gatatcagcagccgttatattggtaacatcaagttgtttgcttcccattcaactatcgaa
ttaccaaaaggcatgccgggcgaaatgttatctcactttacccgcactcgtatcctgaac
aagccgttgaacatgcagctgttgggtgatgcacagccgcatgaacgccgtgagcgtcca
gcgggtggtaacggtggtgagcgtcgtggcggtggccgttcattcggtggcgaacgtcgt
gatgcaactgctggtgctcctcctcgccgttcattcggtagtgaccgtgctccagccggt
ggtggtgaacaacgtcgtggtaatcgtgatggtcagcgctcagctgcaccacgtcgcgat
gatgctgcagcgcctgccgcaccagctcgccgtcgtttcggtgatgcataa
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