Yersinia canariae: F0T03_04295
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Entry
F0T03_04295 CDS
T06446
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
yca
Yersinia canariae
Brite
KEGG Orthology (KO) [BR:
yca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
yca03009
]
F0T03_04295 (rlmD)
Enzymes [BR:
yca01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
F0T03_04295 (rlmD)
Ribosome biogenesis [BR:
yca03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
F0T03_04295 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
PCMT
RrnaAD
MTS
TRM5-TYW2_MTfase
Methyltransf_11
Cons_hypoth95
LELP1
Methyltransf_23
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
QHB34616
UniProt:
A0A857F4H0
LinkDB
All DBs
Position
918225..919556
Genome browser
AA seq
443 aa
AA seq
DB search
MAQFYSPNRRVTTKQTLTVTVNSLDPFGQGVARHNGKAIFIPGTLPGEQAEIELTEQKRQ
YSRGKLKRLLNRCSERVAPACPHFGICGGCQQQHANSQLQQMSKADSLRRLIMRETGSCP
ELDPVICGPEYGYRRRARFGLFYQTKQQQLQMGFHHNESHDLVSVKHCPVLRPELERLLQ
PLYHCLSALQAVRRLGHVELVLADNGPLMVLRHLDTLKEVDRVALTDFALREDIAVYLAG
DSESLEKLIGEEPYYQIEGLRLAFHPRDFIQVNDRVNQQMVAQAIAWLDVRPDERVLDLF
CGMGNFTLPLAKFAREVVGVEGVAALVANGQYNAQNNALPNVSFFHENLESDISCQPWAT
QGFDKILLDPARAGAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRML
DMFPHTGHLESMALFMQEPGVAK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctccaaaccgacgtgtgacgaccaaacaaacgctaactgtgaca
gtaaactcgcttgacccttttggtcagggggttgcgcgccacaacggcaaagctatcttt
attccgggcactttgccaggggagcaagctgaaattgagcttactgagcaaaagcgccaa
tatagccgcggtaaacttaaacgtttgttgaaccgatgcagtgaaagggtggctccagct
tgccctcacttcggtatttgtggaggctgccagcagcagcacgccaatagtcagctacaa
cagatgagcaaggccgattcacttcggcgtttgatcatgcgggagacggggagttgccct
gaattagaccctgttatttgtgggccggaatatggctatcgtcggcgggcaagatttggc
ctgttctaccagacaaagcagcaacaattacaaatgggatttcaccacaacgaatcccat
gatttagttagtgtaaaacactgcccggttctgcggcccgaattagagcgcttgttacag
ccgctttatcactgcttatcggccctacaggccgttcgtcgcctggggcatgtggagctg
gtattggctgataatgggccgttgatggttttacgtcaccttgatacccttaaagaggta
gatcgcgtggcgttaaccgactttgccctgcgagaggatatcgccgtctatctggccggt
gacagcgagagtttggaaaaactcatcggtgaggaaccctattaccagattgagggtcta
cgcttagcgtttcatccacgggattttattcaagtcaatgatagggtcaaccagcaaatg
gtggctcaggctatagcttggctggatgtgcggccagatgagcgcgtgctggatctgttc
tgtggtatgggcaattttaccttgccgctggccaagtttgctcgcgaagtggtcggcgtg
gaaggagttgcggcgctggtagcgaatgggcagtataatgcacagaataacgcgttgccc
aatgtgtcttttttccatgaaaatctggaatctgacatcagttgtcagccgtgggcaaca
caaggatttgataaaatattgttagaccccgcccgcgcaggtgctgccggggtcatgtca
catatagttaaactggcgccaaagcgggtggtgtatgtttcgtgtaatcccactacgctg
gcacgagatagtcaggtgttgttagccgccggttaccgtcttgctcaggtgcggatgttg
gatatgtttccccacaccgggcatcttgaatctatggcgctgtttatgcaggagccaggg
gtcgcaaagtag
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