Yersinia canariae: F0T03_05505
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Entry
F0T03_05505 CDS
T06446
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
yca
Yersinia canariae
Brite
KEGG Orthology (KO) [BR:
yca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
yca03009
]
F0T03_05505 (srmB)
Enzymes [BR:
yca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F0T03_05505 (srmB)
Ribosome biogenesis [BR:
yca03009
]
Prokaryotic type
rRNA helicases
F0T03_05505 (srmB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QHB31673
UniProt:
A0A857EW87
LinkDB
All DBs
Position
complement(1162776..1164101)
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AA seq
441 aa
AA seq
DB search
MTVTNFSELDLDERLIDALRDKGYERPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLL
PALQHLLDFPRKKSGPPRILILTPTRELAMQVADQARELAKHTQLDIATITGGVAYMNHA
EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RKQTLLFSATLEGEAIREFAERILTEPVELEADPSRRERKKIQQWYYRADNIEHKTALLV
HLLKQPEVQKSIIFVRTREKVHQLVSWLREAGINAWFLEGEMVQAKRTEAVIRLSDGRVN
VLVATDVASRGLDIDDISHVFNFDLPLTADVYLHRIGRTGRAGRKGVAISLVEAHDHLLL
GKIGRYLKEPLKPRVIDELRPTSKAPSEKTTGKPSKKVLAKRKELKEAGKEKAKVKVRHR
DAKNVGKRRKAKDKPDTKIAS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaccaatttttccgaactcgatctcgatgaacgcctgattgacgcactgcgc
gacaaaggctatgagcgcccaactgccattcaagctgcggctattccgccagctatggat
gggcgcgatgtattgggttcggcgccaacaggtacgggcaaaactgccgcctttttgctg
ccagccttgcagcatttgctggattttccacgcaaaaaatctggcccaccacgaattttg
atcctgacaccaacccgtgagctagctatgcaggtcgcagatcaagctcgtgagctggcc
aaacacacccaactggatatcgcgacgattaccggcggtgtggcttatatgaaccacgcg
gaagtctttagtgagaatcaggatattgtggtggcaacgaccggccgcttgctgcaatac
atcaaagaagaaaactttgactgtcgggcggtagaaacgctgattctggacgaagctgac
cgcatgcttgatatgggcttcgcacaagatattgaaaccatttcagcagaaactcgttgg
cgcaaacaaaccctactcttctcggccacactggaaggtgaagctatccgtgagtttgcg
gagcgcatcctgactgagccggtagaactggaagccgacccatcacgccgcgaacgtaaa
aaaattcagcaatggtattaccgcgcagataacattgaacataaaactgccttgctggtg
catttactcaagcaaccagaagtacagaaatccattatttttgtccgtacccgtgaaaag
gtacaccaactggtcagttggttacgtgaagccggtattaacgcctggttcctcgaaggc
gaaatggtacaagccaagcgtaccgaagctgttattcgtttaagtgatggccgggtgaac
gtactggtggcgactgatgtggcttcgcgtggattggatatcgacgatatcagccacgtc
ttcaactttgatttaccgctcaccgccgacgtctacctgcaccgcatcggccgaaccggc
cgcgctggacgtaaaggtgtggctatttcactggtcgaagcgcatgaccacttattgctg
ggcaaaattggccgttatctgaaagagccactgaagccacgtgtcattgatgagttacgc
ccgaccagcaaagcgccaagtgaaaaaaccacgggtaagccgtcgaagaaagttttagcg
aagcgtaaagagctaaaagaagccggtaaagaaaaagccaaggttaaggttcggcatcgc
gacgctaaaaatgtgggcaagcgccgtaaagcaaaagacaaaccggatactaagattgct
agctag
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