Yersinia canariae: F0T03_14125
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Entry
F0T03_14125 CDS
T06446
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
yca
Yersinia canariae
Pathway
yca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
F0T03_14125 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yca03400
]
F0T03_14125 (sbcB)
Enzymes [BR:
yca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
F0T03_14125 (sbcB)
DNA repair and recombination proteins [BR:
yca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
F0T03_14125 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
F0T03_14125 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
F0T03_14125 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
YkoP
Motif
Other DBs
NCBI-ProteinID:
QHB33186
UniProt:
A0A857F0H5
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All DBs
Position
3009599..3011029
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AA seq
476 aa
AA seq
DB search
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQP
EAVMITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQGGNSRWDLLDVMRACYALRPDGIVWPENEDGLPSFKLEHLTKANGVEHLHAH
DAMSDVYATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARG
NTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLNAQDAAVPLKL
VHINKCPVLAPAKTLLAENAERLGIDRQRCLQNLQLLRQNPQVREKVVALFAEAEPFAVP
DDVDAQLYNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLAELLFRFRARNYPNTLT
DKEQKRWLEHRREALNPERVQDYVLQLEQFYNLYEGDKEKLALLKALFDYARDLVS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataaaaataagcaaccaacattttatgtgcacgattatgaaacctttggtcag
cgcccggcattagaccggccagcgcagtttgccggggtacgcaccgatttggatttcaat
atcatcgaagaacccttggtagtttactgcgcccccgcagatgactatctgccgcagcca
gaagccgtcatgatcaccggcatcaccccacaacatgctttagccaatggggtaaatgaa
gctgaatttgcacgccaaatccatcaggctttcaatgtacccggcacttgtatcctcggt
tacaacaacattcgtttcgatgatgaagttagccgcaatattttctatcgtaatttctac
gatccctatgcctatagctggcaagggggtaattctcgctgggacttgcttgatgtcatg
cgcgcctgctacgccctgcgaccggacggcattgtctggccggaaaacgaagatggccta
cccagcttcaaattagagcatttaactaaagccaatggcgtcgaacacttacatgcccat
gatgcgatgtcagatgtgtatgccaccatcgctatggcaaaacgggtaaaacaagcccag
ccgcggctgtttgattacctctatcagcatcgcagtaaacataaaataaacgcactgatt
gatatcgcggatatgacgccactggttcatgtgtccggcatgtttggtgcggcacgcggt
aacaccagttgggtcgcgccattggcatggcatcctgagaataaaaatgcagtaattatg
tgtgatctggcgggtgacatgtcgcccctgctggagctggacagtgatacattgcgtgag
cggctgtatacccgccgcgataaactcaatgctcaagacgctgccgtgccactgaaactg
gtacatatcaataaatgcccggtgctggctcccgccaaaaccctgctggcagaaaatgcc
gaacgactgggtattgaccgtcagcgctgcctgcaaaatctgcaactgttgcggcaaaat
ccgcaagtccgcgaaaaagtggtcgccctgtttgctgaagccgaaccttttgccgtgccc
gacgatgtggatgcacagctctataatggctttttcagtgatgctgaccgcgccaccatg
aaaattattctgcaaactgagccgcaaaatctgccagcactggatttgacattccaggac
ccacgactggcagagctactattccgttttcgcgcacgtaactaccctaataccttgact
gataaggaacaaaagcgctggttagaacatcgtcgtgaagcactgaatccagaaagagtg
caagactatgtgctgcaactggagcagttttataatctgtatgagggagacaaagagaag
ctggccctgctaaaagcactgtttgactatgccagagatctggtgagttaa
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