Yersinia canariae: F0T03_15035
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Entry
F0T03_15035 CDS
T06446
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
yca
Yersinia canariae
Pathway
yca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F0T03_15035 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yca03019
]
F0T03_15035 (rhlE)
Enzymes [BR:
yca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F0T03_15035 (rhlE)
Messenger RNA biogenesis [BR:
yca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F0T03_15035 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
HI1480
AAA_22
Shikimate_DH
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QHB33343
UniProt:
A0A857F0Y7
LinkDB
All DBs
Position
complement(3197155..3198513)
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AA seq
452 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQNQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIEQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAAGR
GDSRTSRPRSQADGQRRPAGPSSRGRSRKPGE
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcttaaacgccgacatcctgcgcgctgttgaagagcagggc
taccttgtgccgacacctattcaacgtcaggcaatccctgtggtactggaaggccgtgat
ttaatggccagtgcgcaaaccggtaccggtaaaactgctggttttaccttgccgctgttg
caactgctgagtcagaaccaacagccaattaaaggccgtcgtccggtacgtgcgctgatt
ttaacgccaacccgcgaactggctgcgcagattgacgaaaacgtacagagttacagcaaa
tatctgaagctgcgttcgctggtggtatttggtggcgttagtattaatccacagatgatg
aaattgcgtggtggcgttgatattttggtcgcgacccctggccgtttgctggatctggaa
catcagaacgcggttgatttgtccaagattgagattttggtgctggacgaagctgaccgt
atgctggatatgggctttattcacgatatccgtcgtgtcttggcaaaactgccagccaaa
cgtcagaacctgctgttctccgccaccttctctgatgagattaaaggtttggccagcaag
ctgttgcacaacccggcttctgttgaagtggcccgccgtaatactgcttctgaacaaatt
gagcaaagcgttcatttcgtggataagaaccgcaagcgtgagttattgtcccagatgatc
ggtgaaggtaactggcagcaagtattggtgttcaaccgcaccaaacacggcgctaaccat
ttagcagaacagctaaataaagacggtattactgccgcagcaattcacggtaataagagt
caaggtgcgcgaactcgtgcactggctgactttaaagatggcaaaatccgtgtgctggtc
gccactgatatcgccgctcgtggtctggatattgaccagttaccccatgtggttaactat
gagctaccaaacgttccagaggattacgtgcaccgtattggccgtactggccgcgcagaa
cgtaccggtgaagcgatttctttggtttgtgtcgatgaacataaactgctgcgtgatatt
gagcgcttactaaagcgtgaaattccacgtatcgcgctggatggctatgagccagaccca
agcattaaggcagaccctattcaaaatgggcgtcagggccgtggtgcgcaacgtcctgga
atggggcgcggcagcagtgctggacgcccccaaaatggtggcggtgcagcagccggtcgc
ggtgacagccgcaccagtcgcccgcgtagccaggctgatggtcaacgccgtccggccggc
ccatcctcacgtggtcgtagccgcaaaccaggcgaataa
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