Yersinia canariae: F0T03_19645
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Entry
F0T03_19645 CDS
T06446
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
yca
Yersinia canariae
Brite
KEGG Orthology (KO) [BR:
yca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yca03019
]
F0T03_19645 (csrD)
Messenger RNA biogenesis [BR:
yca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F0T03_19645 (csrD)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GGDEF_2
Claudin_2
Motif
Other DBs
NCBI-ProteinID:
QHB34158
UniProt:
A0A857F3U6
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All DBs
Position
complement(4211602..4213521)
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AA seq
639 aa
AA seq
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MRFTTKLSVFMTLLVVLAMCLVLLGSTASFFYLCQKKMEHRLQSIVTAYDQSLLLHPADK
EREWLPVMMRTLGVLEVSIQNEDSTLYQLKLPAIYTPWNGQIRHRSLVVPMLHQPGASMH
FTYIDPLSSYARSLYAAAILSLAVVIIALTLLLSFRWLREQTAGQEKLERRAKRILNGER
EYAINSDGHEWPPCASRAIDHLLAELIEAREERNRVDTLIRTFAAQDAKTGFSNRHFFDN
QLTTQMEESGAHGVVMMVQLPDFDSLIETDDHQQVQELMHSLINLLSTFVTRHPSALLAR
YHHSDIAILLPHKTLKDADVMAAQLVHAVGSLPEPHVIDRESLLHIGIVAYRNGDSAEQI
MDNVGQATKNAAMYGGNGWYVYDTQVAEKGRGSVKWRTLLEQTLVNGGPRLYQKPVVTVD
GKIHHREIISRIYDGEQELLAAEFTPLVQLFGLGELYDRQKIDRIIPLLALWPDETLAFS
ISVDSLLQRPFQRWLRDTLLQCRKSDRERIIFELAEADVCQYISQIRPMMRLLLGVGCKV
MVSQAGLTVVSTSYIKSLRVEMIKLHPGLVRSINLRYENQLFVESLTGACAGTHAKVFAA
EVLTREEWQTLKAKGVYGGQGNFFAPPTLLSPGKKKYSY
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttacaaccaaactttctgtatttatgactttgctggtcgtattagcgatgtgt
ttagtgctactgggtagcacggcaagctttttttatttgtgtcaaaaaaagatggagcac
cgccttcagagtattgtgacagcttatgatcagtcattgctgttgcaccctgctgataaa
gaacgcgaatggttgccggtaatgatgcggacgttgggtgttttggaagtaagcatccag
aatgaagacagcacgttatatcaactaaaactccctgctatttataccccttggaacggc
caaatccgccatcgcagtttggttgttcccatgctgcaccagccgggggcatcaatgcat
tttacctatattgaccccttaagcagctatgcccgatctctttatgctgccgctattttg
tcgttggcggtggtgattatcgcgctgacacttctattaagtttccgttggctacgtgaa
cagaccgcaggccaggaaaaactggagcggcgggccaaacgtattcttaatggcgaacgt
gaatacgctattaatagtgatggccacgaatggcccccttgcgccagtcgcgctattgat
catttattggcagagcttatagaagctagggaagagcgtaatcgtgttgatactttaatt
cgcacatttgctgcacaagatgccaaaacaggattcagtaaccgccatttttttgataac
caactgacgactcaaatggaagagtccggtgcccatggggtcgttatgatggtgcagtta
ccggattttgacagtttaattgaaacggatgatcaccagcaggtgcaagaactgatgcat
tcgctgattaatctgctttctacttttgttacgcgtcatccctctgcattattggcgcgt
tatcatcacagtgatattgcgattttactccctcataaaacgcttaaagatgccgatgtc
atggctgcacagttagtacatgcagttgggtcattacccgagccgcatgttattgaccga
gagtcattactgcacattggcattgtggcgtaccgcaatggcgattcagctgagcagata
atggataatgttggacaagcgaccaaaaatgcggcgatgtatgggggaaatggttggtat
gtttacgacacacaagttgcagaaaaagggcgtggtagcgtcaagtggcgcactttgctg
gaacaaactttggttaatggtggcccacggctttaccagaaacctgttgttacagttgac
ggtaaaattcaccaccgtgaaataatcagccgcatatatgatggcgagcaagagttgctg
gccgctgaatttacgccgctggtgcaattatttggtttgggtgagctttatgatcgccaa
aaaattgatcggataattcctttattagctttatggccggacgaaactctggcattttct
atcagcgttgattcattattacagcgtcctttccagcgctggctgcgggatacgttgttg
caatgcagaaaatcggatagagagcgaattatctttgaacttgcagaggcagatgtgtgt
caatatatcagccaaatccgtccgatgatgcgtttgttactgggtgtcggttgcaaggtc
atggtgtcacaggccggattgacggttgtcagtacgtcatatattaagtctctccgggtt
gaaatgattaaacttcatccgggattagtaagaagcattaatttacgttatgaaaatcag
ttgtttgtcgagagtctaacgggggcttgtgcaggaacgcatgcgaaagttttcgcagca
gaagttcttacccgtgaagaatggcaaactctgaaggcgaaaggtgtttacggtggacag
ggcaatttttttgctccgccgacgcttttgagccccggaaagaaaaaatattcgtattag
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