Yersinia enterocolitica (type O 5) YE53/03: YE5303_05871
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Entry
YE5303_05871 CDS
T03739
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
yee
Yersinia enterocolitica (type O:5) YE53/03
Pathway
yee03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
YE5303_05871 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yee03400
]
YE5303_05871 (recD)
Enzymes [BR:
yee01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
YE5303_05871 (recD)
DNA repair and recombination proteins [BR:
yee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YE5303_05871 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
SH3_13
AAA_22
UvrD-helicase
PhoH
SLFN-g3_helicase
AAA_16
nSTAND3
CbiA
UvrD_C
AAA_28
T2SSE
MukB
FtsK_SpoIIIE
DEAD
MeaB
Flavi_DEAD
TrwB_AAD_bind
SRP54
NPHP3_N
AAA
AAA_14
DO-GTPase1
ATPase
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
CCQ39297
LinkDB
All DBs
Position
998922..1000823
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AA seq
633 aa
AA seq
DB search
MMTLLEQAVRDHLLRPLDVQFSRMIAGDDDPMLQLAAAVLSAEAGAGHVCLPLSYLQPDQ
LFGGRQPALSQALWQAVGMPDQLHWIQKLNSSPAVSDGSQPTPLVLQNDRLYLQRMWQYE
GDVVRFIASDNMASLINKTSDGSGTRDVNEILLRDTLDRLFGPAENEVDWQKVAAAVAAT
RRISVISGGPGTGKTTTVAKLLTALIQLSQGQRLRIQLAAPTGKAAARLTESLGNAIRQL
SLTDDERKLFPDQASTLHRLLGAQPNSQRLRYHRGNPLNLDVLVVDEASMVDLPMMARLI
AALPTKAQVIFLGDRDQLASVEAGAVLGDICRFAELGYSEPRAKQLARLTGCILVGNIPI
GEVEADAVNVRDSLCLLRKSYRFDEKSGIGQLALAVNAGRYRDALTVFNGTYSDIERFSL
TDPDDYQVLLEDCAAGYQHYLELAAAGADAVDVLAAFGRYQLLCALRAGPFGVSGLNERI
EQLLHRKRLIERTPGPSGRWYVGRPVMIGLNDSTLGLFNGDIGIALPDPEGELRVHFQLP
DGNIKSVQPSRLPSHETAYAMTVHKSQGSEFEHTALVLPNTFMPVLTRELVYTAITRARQ
RLTLYCSDTVLSHAIRTPTLRVSGLVERLNQLK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatgacgttactggagcaagcggttcgtgaccacttactacggccactggatgttcag
ttctcgcggatgatagccggtgatgatgatcccatgttgcaactggcagccgctgttctc
agtgctgaagctggtgctgggcacgtgtgcctaccattgagttatttgcagccagatcag
ctgtttggtggccgacagccagcgctatcacaagcactgtggcaggctgttggtatgcca
gatcaattacattggatacaaaaactcaatagctccccggcagtcagtgatggttcacaa
cccacccccttagtgttgcaaaatgaccgtttgtatttacaacggatgtggcaatacgaa
ggtgatgttgtgcgctttattgccagtgacaatatggcgtcgcttatcaacaaaaccagt
gacggcagcggaaccagagacgtcaacgaaatattattaagagatacgcttgatcgctta
tttgggccagcagaaaatgaggtcgactggcaaaaagtcgccgctgcggtagcggctacc
cgccgtatttccgtgatttccggtggtccagggacggggaaaacaacgacggtagccaag
ttattgaccgcattgatacaactgagtcaagggcaacgtttacgtatccaacttgccgct
ccaaccggtaaagctgccgcacggctgactgaatcgctggggaacgccattcgccagctc
tcactaactgacgatgaacgcaagctatttccagatcaagcatccacattgcaccgttta
ttgggtgcacaacctaatagccagcgcttacggtatcaccgtggtaacccgctaaacctt
gatgtgctggtggttgatgaagcatcaatggtggatttgcccatgatggcgcggctcatt
gcagcattacccactaaagctcaggtgatttttctcggtgaccgtgaccaattggcttcg
gtagaggcgggtgcagtactgggtgatatatgccgctttgctgagttgggttacagcgag
cctagagctaaacagttagctcgcttaacgggatgcatattagtgggaaacatcccgatt
ggtgaggtggaggcagatgccgtcaatgtccgtgatagtttgtgtttgctgcgcaaaagt
taccgcttcgatgaaaagtccggtattgggcaacttgctttagcggttaatgccgggaga
tatcgtgatgcattaaccgtttttaatggtacatattcggatatagagcgcttttctctg
acagatcccgatgattatcaggtattgctggaggactgtgctgctggttatcagcactat
cttgaactggcagctgcaggtgctgatgcggtggatgtacttgctgcatttggccgctat
caactgttatgtgcattacgcgctgggccatttggtgtcagtggcttaaacgagcggatc
gaacaactattgcatcgcaaacgattgatagagcgaacgccggggccatcgggccgttgg
tatgttggcaggccggtgatgatagggcttaatgacagtacactcggtttattcaacggc
gatattggtattgctttgcctgatcctgaaggggagctgcgggtgcatttccaattacca
gacggcaatatcaaatcggtgcagccgagtcgtcttcccagccatgaaactgcttatgct
atgaccgtacataaatctcaagggtcggagtttgagcatactgcattggttctacccaat
acgttcatgccagtgttaactcgagaattggtctataccgcgattacccgcgcacgccag
cgtttgactctatattgcagcgatacagtattaagtcatgcgatacgtacccctacactt
cgcgtgagcgggttggtggagcgtttgaatcaattgaagtga
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