Yersinia enterocolitica (type O 5) YE53/03: YE5303_06241
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Entry
YE5303_06241 CDS
T03739
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha chain
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
yee
Yersinia enterocolitica (type O:5) YE53/03
Pathway
yee03030
DNA replication
yee03430
Mismatch repair
yee03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YE5303_06241 (dnaE)
03430 Mismatch repair
YE5303_06241 (dnaE)
03440 Homologous recombination
YE5303_06241 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yee03032
]
YE5303_06241 (dnaE)
03400 DNA repair and recombination proteins [BR:
yee03400
]
YE5303_06241 (dnaE)
Enzymes [BR:
yee01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YE5303_06241 (dnaE)
DNA replication proteins [BR:
yee03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YE5303_06241 (dnaE)
DNA repair and recombination proteins [BR:
yee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YE5303_06241 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
MutS_II
Motif
Other DBs
NCBI-ProteinID:
CCQ39334
LinkDB
All DBs
Position
1039072..1042587
Genome browser
AA seq
1171 aa
AA seq
DB search
MIQSTNFWCLDMAEPRFVHLRVHSDYSMIDGLAKIGPLVKRAAALGMPALAITDFTNLCG
LVKFYGSAHSAGVKPIIGADFYVQSEILGDELAHLTVLARNNEGYQNLTLLISEAYQRGY
GAAGPIIDRDWLIKHKEGLILLSGGRMGDVGKFILRGNHAQVDQCLEFYQEHFPDSYYLE
LIRTGRPDEENYLHAAVALATERGLPVVATNDVRFIDESDFDAHEIRVAIHDGFTLVDPK
RPKNYSPQQFMRDEEQMCELFADIPEALINSVEIAKRCNVTIRLGEYFLPQFPTGDMSTE
DFLVEKSKQGLEERLEFLFPDPEVRAQKRPAYDERLEIELKVINQMGFPGYFLIVMEFIQ
WSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCME
KRDLVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGM
TLEKAFAAEPQLPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLY
CDAEGNNPVTQFDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARRAKTGLEPIDITSI
PLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVD
NFIDRKHGREAISYPDIEWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYSLGGADMLR
RAMGKKNPAEMAKQRSVFEDGAKSQGVDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSY
QTLWLKAHYPAEFMAAVMTADMDNTDKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEG
EIVYGIGAIKGVGEGPIEAMLEARKEGGYFKELFDLCARVDTKKLNRRILEKLIMSGAFD
RLGPHRAALMSSLGEALKAADQHAKAEAIGQVDMFGVLADAPEQVEQSYANVPPWQEQIV
LDGERETLGLYLTGHPITQYLKEIERYAGGLRLKDMHPTDRGKMTMAAGLVIAARVMVTK
RGNRIGICTLDDRSGRLEVMLFTDALEKYQHLLEKDRILIATGQVSFDDFSGGLKMTARE
LMDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRAGTIPVHLYYQREDARARLR
FGATWRVTPTDRLLIDLRTLVGNEQVELEFD
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
gtgattcaatccactaatttctggtgtctggatatggccgaacctcgttttgtccacctg
cgtgttcacagcgattactccatgatcgatggattagccaagattggacccttggtgaag
agagctgctgcattaggcatgcccgctctggccattaccgattttaccaatctgtgcggc
ttggtaaaattctacggtagcgcgcatagtgctggagtcaaacccatcatcggcgcagac
ttctatgtgcaaagtgaaatcttaggtgatgaattagctcatcttactgtgctggcacgc
aataatgaaggttaccaaaatcttactttactgatatctgaagcttatcaacgcggctat
ggcgcagctggccctattattgaccgtgactggctgattaagcataaagaaggtctgatt
ctgctgtccggtggtcggatgggggatgtgggtaagtttattctgcggggtaatcatgct
caggttgatcagtgccttgagttttatcaagagcatttccctgacagttactatctggaa
ttaatccgtactggtcgcccggatgaagaaaactaccttcatgccgctgtggcattagca
accgaacgtggcttgcccgtagtagcgaccaatgatgtgcgttttatcgatgaatcagat
tttgatgcccacgagattcgcgtggctatccacgacggctttactctggttgatcctaag
cgacctaaaaactatagcccgcagcagtttatgcgcgacgaagagcagatgtgtgagctg
ttcgcggatattcctgaggcgctgattaacagtgttgaaatcgctaaacgttgtaatgtg
acgatccggcttggggaatattttttaccccagttcccaacgggtgatatgagcacagag
gacttcctggttgaaaagtctaaacaaggtttagaagaacgactggagttcttgttccct
gatcctgaagttcgggcacaaaaacgccccgcatatgatgaacgtctggaaatcgaacta
aaagttattaaccagatgggcttccccggctacttcttgatagtaatggaatttatccag
tggtcaaaagataacggagtaccggtaggccctggacgtggttctggtgccggttctctg
gttgcttacgcgctgaagattaccgatcttgatccactggaatttgacctactgttcgaa
cgtttcttaaacccagaacgtgtatcaatgcctgacttcgacgtcgacttctgcatggag
aagcgcgatctggtgattgagcacgttgcggatatgtatggccgggatgctgtttctcag
ataattacctttggtactatggcagccaaagcggtgatccgcgatgtgggccgtgtgctg
ggccatccttatggttttgtcgatcgtatctccaaactggtcccgcctgatccgggcatg
acgttggagaaagctttcgcagcggaaccgcaactgcctgaaatctatgaggcagatgaa
gaagttagagcgctgattgatatggcgcgaaaattggaaggggtaacgcgtaacgccggt
aagcatgccggtggggtggttatcgcaccaacaaaaattaccgatttcgccccactatac
tgtgatgcggaagggaataacccggttacacagttcgataagaatgatgtggaatatgcc
ggattggtgaagtttgacttccttggtttgcgaacgctcactatcattaactgggcgttg
gagatgatcaacgcccggcgcgctaaaaccggattagagccgattgatattacgtctatt
ccgctggatgataaaaaaagcttcgatatgctgcaacgttctgaaacgacagcagtattc
cagctagaatccagaggtatgaaggatcttatcaagcgtctaaaacctgactgcttcgaa
gatatgatcgcactggtggcattattccgccccggcccgttgcaatcagggatggttgat
aactttattgaccgtaaacacggccgagaagcgatatcctatccagatattgaatggcag
catgaatctctaaaaccggtgcttgagccgacctacggcatcatcttgtaccaagaacag
gttatgcagattgcgcaggttctgtctggttactcactcggcggtgcagatatgttgcgg
cgtgcgatgggtaagaaaaacccggcagagatggcgaaacagcgctctgtgtttgaagat
ggagccaaaagccagggtgttgacggcgagctggcaattaaaatctttgacctggtagag
aaatttgccggctacgggtttaacaagtcacactcagcagcttatgcattggtttcctat
caaacgctatggctgaaagctcattacccagctgaatttatggctgcggtaatgacggcc
gatatggataacactgataaagtagttggtctggttgatgagtgctggcggatggggctg
aaaattctgcctccggatatcaacagcggcctatatcatttccatgtaaatgatgagggc
gaaattgtttatggtatcggtgcaatcaaaggtgttggcgaggggcctatcgaggccatg
ttggaagcccgtaaagaggggggctatttcaaagagttatttgatttatgtgccagagtt
gacactaaaaaactcaatcgtcgaattttagaaaagcttattatgtcaggtgcctttgac
cgtttggggccacaccgggctgcattaatgagctcgctgggtgaggcattaaaggcagca
gaccaacatgccaaggcagaagctattggtcaggttgatatgtttggtgtattggcagat
gcaccagagcaggttgagcaatcttatgctaatgtgccgccgtggcaagagcagattgtt
ttagacggtgagcgggaaacgctggggttatacctgaccggccatccgatcacccagtat
ctgaaggaaatagaacgttatgccggcgggctgcgtttgaaagatatgcatccgacggat
cggggcaaaatgaccatggctgcggggctggttatcgcagccagagttatggtgacaaaa
cgcggaaatcgtattggcatttgtactttggatgaccgttccgggcgtcttgaggtcatg
ctattcaccgatgcgttggaaaaatatcagcatttgttggaaaaagaccgtatcctgata
gccaccggacaggtcagctttgatgactttagtggtggacttaaaatgaccgcccgtgag
ttaatggacatcagtgaagctcgtgaaaaatatgcccgtgggcttgctatatcgctgacc
gacaggcaaattgatgaccagcttttgaaccgtctccgtcagtcgttggaaccccatcga
gcggggacgatcccagtgcatctttattaccaacgggaagatgctcgcgcccggctgcgg
tttggagccacatggcgcgtgacgcccaccgatcgcttattgatagatttgcgaacgctg
gtaggtaatgagcaggtggaactggaatttgactaa
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