Yersinia enterocolitica (type O 5) YE53/03: YE5303_14801
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Entry
YE5303_14801 CDS
T03739
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
yee
Yersinia enterocolitica (type O:5) YE53/03
Pathway
yee03030
DNA replication
yee03430
Mismatch repair
yee03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YE5303_14801 (holB)
03430 Mismatch repair
YE5303_14801 (holB)
03440 Homologous recombination
YE5303_14801 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yee03032
]
YE5303_14801 (holB)
03400 DNA repair and recombination proteins [BR:
yee03400
]
YE5303_14801 (holB)
Enzymes [BR:
yee01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
YE5303_14801 (holB)
DNA replication proteins [BR:
yee03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
YE5303_14801 (holB)
DNA repair and recombination proteins [BR:
yee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
YE5303_14801 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
Cytochrom_C
DUF6587
Motif
Other DBs
NCBI-ProteinID:
CCQ40185
LinkDB
All DBs
Position
2010813..2011820
Genome browser
AA seq
335 aa
AA seq
DB search
MKWYPWLTAPYRQWVGQQTAGRGHHALLLHSLPGNGEEALIYGISRWLMCQQRQGEKSCG
ECHSCRLMLAGNHPDWYVLTPEKGKSSLGVELVRQQIEKLYSHAQQGGAKVVWLPHAELL
TDAAANALLKTLEEPPEKTYFLLDCHQPASLLATLRSRCFYWHLACPDTALSLQWLQRQI
PAEPVSMLAALKLSEGAPLAAERLLQPERWATRTTLCHALHSALHSTDLLSLLPQLNHDD
APERLQWISSLVLDALKWQQGAGQFAVNQDQLPLVQQLAGMAATPVLLHSAQALGHCRHQ
LLLVVGVNRELLLTEFLLNWETALTTSTYSTLSSL
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggtacccgtggctcactgcgccttaccgtcagtgggtagggcagcagactgcc
gggcgaggccatcatgcattattgctgcactctttgcctggaaatggcgaagaagcactg
atttacggtattagccgttggttgatgtgccagcaacgacaaggcgagaaaagctgtggt
gaatgtcatagttgccgcttgatgttggcgggcaatcatcctgactggtatgtgctgaca
ccggagaaaggtaaaagcagtctcggcgttgagctggtgcgccaacagattgaaaaactc
tattcccatgctcagcaaggcggagcaaaagtcgtgtggcttccccacgcggagttgctt
accgatgcggcggcgaatgcgttgttaaaaacgttggaagagccaccggagaaaacctat
tttctactcgattgccatcaacctgccagtttgcttgcgacactgcgcagccgctgcttt
tactggcatctggcctgcccggataccgcgcttagcctgcaatggcttcagcggcagatt
ccagcagaacctgtctcgatgctggcggcacttaaattgagtgaaggtgcgccgttagcg
gccgagcgtttactgcaaccggaacgctgggccaccagaaccactttgtgccatgcattg
catagcgcactgcacagcacggatttactgtcgttattaccgcaacttaaccatgatgat
gctccagaacgcttacaatggatctcttcattggtgttggatgcgttgaaatggcagcaa
ggcgcgggtcaatttgccgtcaaccaggatcaattgcctctggtacagcaattggctggc
atggccgcaacaccggtattgctccattcagcccaggcgctgggccattgtcgtcatcaa
ttattattggtggtaggtgttaatcgtgaattattactcaccgagttcctgcttaactgg
gaaacagcgctgactacgagcacttattccaccttatcttcgttgtaa
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