Yersinia enterocolitica (type O 5) YE53/03: YE5303_18321
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Entry
YE5303_18321 CDS
T03739
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
yee
Yersinia enterocolitica (type O:5) YE53/03
Brite
KEGG Orthology (KO) [BR:
yee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yee03016
]
YE5303_18321 (rnb)
Enzymes [BR:
yee01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
YE5303_18321 (rnb)
Transfer RNA biogenesis [BR:
yee03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
YE5303_18321 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
CCQ40531
LinkDB
All DBs
Position
complement(2365663..2367597)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHTQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPQMKKVMHGDRI
IATLHTDKDREIAEPETLVEPFLSRFVGRVQRKDDRLSIVPDHPLLRDAIQCRPVRELTH
DFQTGDWAVAEMRRHPLKGDRAFNADLTAFITDGEDHFVPWWVTLARHNLEREAPVMVES
ALHDANLQREDLTALNFVTIDSASTEDMDDALHVQDNGDGSLLLTIAIADPTAYVDENSE
LDLIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLVCRVTIAADGALGDDIHF
SAAWVESKAKLVYDEVSDWLEGSGYWQPQNADIAEQITLLKRVCEARSHWRETHALVFKD
RPDYRFLLGEKGEVLDIIVEHRRIANRIVEECMIAANVCAAIALRDNLGFGIYNVHTGFD
PALVEQAANVLQANGVEADPQALLTLPGFCELRRHLDALPTQFLDSRIRRFQTFAEISTV
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIITGQQAEKPQDEITVQLAERRRLNRM
AERDVGDWLYARYLQPMAGTDTRFPAEIIDVTRGGLRVRLLDNGAVAFIPAPFIHAVRDE
MVCSQETGTVQIKGETVYSQSDKIEVRIAEVRMETRNVVARPVV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagctaaaacagcaacttcacactcagactcca
cgcgtcgaaggcgtggttaaaggtactgagaaaggctttggctttcttgaggtagacggg
cagaaaagttactttattccgccgccacagatgaaaaaagtcatgcatggcgatcgtatt
attgccactcttcacaccgataaagatcgtgaaattgctgagccggaaaccctggttgag
ccatttttgtcccgctttgttggccgtgtgcaacgaaaagatgaccgcctgtctatcgtt
cctgaccatcctctgctgcgtgatgccattcaatgtcgtccagtgcgtgaactgactcac
gattttcagaccggtgattgggcggtggccgagatgcgccgccatccattaaaaggtgac
cgtgcctttaatgccgacctgactgcttttattactgatggtgaagatcacttcgtgcct
tggtgggtcaccctggcgcgccataatctggagcgtgaagcgcccgtcatggttgaatcc
gctctgcatgatgccaacctgcaacgggaagatttgactgcgcttaattttgtcactatc
gacagcgccagcacggaagatatggatgacgcgttgcatgtgcaagacaacggtgacggc
tccctgttgttgaccattgctattgctgaccctactgcttatgtcgatgaaaacagtgag
ttggacttaattgcccgtaaacgtgcatttaccaactatctgccgggctttaatatcccg
atgctgccacgtgatttatccgataacctttgctcactgcggccgaatgaacgccgcccg
gtattggtgtgccgcgtcactatcgctgccgatggcgcgctcggtgatgatattcacttc
tctgccgcctgggttgagtcgaaagccaaactggtttatgacgaagtttctgattggtta
gaaggcagtggttactggcagccacaaaatgctgatatcgctgaacaaatcacattatta
aaacgtgtttgcgaagcgcgcagccattggcgtgaaacacatgcattggtgtttaaagac
cggcctgactatcgcttcttgttgggcgaaaaaggcgaagtgctggatatcattgttgaa
caccgtcgtattgctaaccgtattgttgaagagtgcatgattgccgccaacgtctgtgcc
gctattgcgctgcgtgataatcttggttttggtatctataacgtgcataccggttttgat
cccgcgctggttgagcaagccgctaatgtgttgcaggccaatggggtggaagccgatccg
caagcgctgctgaccttacctggtttctgtgaattgcgccgtcatcttgatgccttaccg
acccagttccttgatagtcgcatccgccgtttccagacattcgctgaaatcagcacggtt
cccggcccacacttcggtttagggcttgaagcttacgccacctggacctcgccaattcgt
aaatacggcgatatggtcaaccatcgtctgctgaaagccattattaccggacagcaagcg
gaaaaaccacaggacgaaatcacggttcaattggccgaacgccgccgtttgaatcgcatg
gcggaacgtgatgtcggtgattggttgtatgcccgttacctacaaccgatggcaggcacc
gatacgcgcttccctgcggaaatcattgatgtcactcgcggcggcctacgggtgcgctta
ctggataacggcgcagtcgcctttattcccgcgccctttattcatgcggtgcgtgatgaa
atggtctgcagccaggaaaccggcactgtacaaatcaaaggtgaaacggtttacagccag
agcgacaaaattgaagtacgcattgccgaagtgcggatggaaacgcgtaacgtggtggca
cgcccagtggtttga
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