Yersinia enterocolitica (type O 5) YE53/03: YE5303_28961
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Entry
YE5303_28961 CDS
T03739
Symbol
csdA
Name
(GenBank) cold-shock dead-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yee
Yersinia enterocolitica (type O:5) YE53/03
Pathway
yee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YE5303_28961 (csdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yee03019
]
YE5303_28961 (csdA)
03009 Ribosome biogenesis [BR:
yee03009
]
YE5303_28961 (csdA)
Enzymes [BR:
yee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YE5303_28961 (csdA)
Messenger RNA biogenesis [BR:
yee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YE5303_28961 (csdA)
Ribosome biogenesis [BR:
yee03009
]
Prokaryotic type
rRNA helicases
YE5303_28961 (csdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
DRTGG
UTP25_NTPase-like
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
CCQ42207
LinkDB
All DBs
Position
complement(4298286..4300262)
Genome browser
AA seq
658 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIDPSLKAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDGVRKNDALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQN
IERTMKMTIPPVQLPNAELLGERRLAKFAAKVGQQLESSDLDLYRALLAKLQPEEGFDIE
TLAAALLKMAQGERPLILPPEAPRRPQREFNTRDDRGSDRGRDRNDSRREPRSDSRDGGE
RPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGGERRGGGAGRSFGGE
RRDGAAGAPPRRSFGSDRAPAGAGEQRRGNRDGQRSAAPRRDDAAAPAAPARRRFGDA
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatctggggctgtccgctccaattctttct
gctctgactgatcttggttatgaaaaaccatctcctatccagttggaatgtattccacac
ctgttgaacggccgtgatgttctcggcatggcgcaaaccggtagtggcaaaacagccgca
tttggtctgccgctgttacacaacattgatccaagcctgaaagcaccacaagtgttagta
ctggctccaactcgtgagttggctattcaagttgctgaagcattatctagcttctctaaa
catatgaacggcgttaacgtggtagctctgtatggcggccagcgttatgacgttcaatta
cgcgctttgcgccaggggccacaagttgttgttggtaccccaggtcgtctgttagaccat
ctgaaacgcggtacccttaacctgtccaacctgagtggtttagtgttggatgaagcagat
gaaatgctgcgcatgggctttatcgaagacgtggaaaatattctggcgcagatcccggct
gaacatcagaccgcgctgttctctgccactatgccagaagcgattcgtcgtattacccgt
cgctttatgaaagagccacaggaagttcgcattcagtctagcatgactacccgtcctgat
atcagccagagctattgggttgtagacggtgtccgtaaaaacgatgcattggttcgtttc
ctggaagctgaagattttgacgctgctatcattttcgttcgtaccaaaaacgcgacgctg
gaagtggctgaagctttggaacgtagcggttataacagcgctgcattgaatggtgacatg
aatcaggctgcacgtgagcagactcttgaacgcctgaaaaatggtcgtttagatattctg
attgcaactgatgttgcggctcgtggtttggacgttgagcgcatcagcctggtagtaaac
tatgatatccctatggattcagagtcttatgtccaccgtatcggtcgtaccggtcgtgca
ggtcgtgcaggtcgtgcattactgttcgttgatagacgtgaacgtcgtctgttgcagaac
attgaacgtactatgaagatgactatcccaccagtccaattgccaaacgcggaattactg
ggcgaacgtcgcttagccaaatttgcggctaaagttggccaacagctggaaagcagtgat
ttggatctgtaccgtgcgttgctggcgaagctacaaccagaagaagggtttgatattgaa
actctggctgctgcactgctgaaaatggcacagggcgaacgtcctctgattctgcctcca
gaagcaccacgtcgtccacagcgtgaattcaatactcgcgatgaccgtggtagcgatcgc
ggtcgtgaccgtaatgacagccgtcgtgaacctcgttctgacagccgtgacggtggcgaa
cgtccagcacgtcgcgaacgtcgtgatgttggtgagatggaactgtaccgcattgaagtt
ggccgcgatgatggtgttgaagttcgtcatatcgttggcgctattgctaacgaaggtgat
atcagcagccgttacatcggtaacatcaagctgtttgcttcacattcaactatcgaactg
ccgaaaggcatgccgggcgaaatgttatctcacttcactcgcacccgtatcctgaacaag
ccgctgaacatgcagctgttgggtgatgcacagccgcatgaacgccgtgagcgtcctgct
ggcggtaacggtggtggtgagcgtcgtggcggtggtgctggccgttcattcggtggcgaa
cgccgtgacggtgctgctggtgctcctcctcgtcgttcattcggtagtgaccgtgctcct
gctggtgctggcgaacagcgtcgtggcaatcgtgatggtcagcgttcagctgcaccacgt
cgtgatgatgccgcagcgcctgcagcacctgctcgtcgtcgtttcggtgacgcataa
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