Yersinia enterocolitica (type O 5) YE53/03: YE5303_29501
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Entry
YE5303_29501 CDS
T03739
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
yee
Yersinia enterocolitica (type O:5) YE53/03
Pathway
yee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YE5303_29501 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yee03019
]
YE5303_29501 (rnr)
03016 Transfer RNA biogenesis [BR:
yee03016
]
YE5303_29501 (rnr)
Enzymes [BR:
yee01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
YE5303_29501 (rnr)
Messenger RNA biogenesis [BR:
yee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YE5303_29501 (rnr)
Transfer RNA biogenesis [BR:
yee03016
]
Prokaryotic type
tRNA degradation factors
YE5303_29501 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
RNase_II_C_S1
HTH_20
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
CCQ42262
LinkDB
All DBs
Position
complement(4356411..4358966)
Genome browser
AA seq
851 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLSGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGFGFLRVEGSKDDLYLSAEQMKTAIH
GDVVLAQPVGADRKGRREARIVRVLVPKTSQIVGRYFTDAGTGFVVPDDGRLSFDILIPP
DAINGARMGYMVVVELTQRPTRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLKEQVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPRTALDDEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQYKPLVPHLLELHTMYKALDQA
RAERGGIAFETEEAKFIFNAERRIERIESTVRNDAHKLIEECMILANIAAARFVEKHNEP
ALFRVHDRPSDDHISALRSVLSELGLTLGGGLKPEPKDYAVLMDEVADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNVKERWTPT
GGWHSEYEDMLQLGEHCSMTERRADEATRNVADWLKCDFMQDQVGKVFTGIIASVTGFGF
FVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGQVYRLGDTVEIRVEAVHMDERK
IDFALVSSTRKPRGEGKTARDKAKKADGQRTMRDTSTGRGGRGSSSSSSSSSRRDSAPAG
SGQKRPRRAKKPANFEPDSAFRPADAAAKLDDKALAEKKAKAKAKRASAKTKKIAAATKA
KRAKKKTSSDQ
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcttggagcgagaagcagaaaaatatgagtcaccaatccctagc
cgggagttcattttggctcatctcgcgaaacgcgaaacacctgccagccgtgaagaactg
gcaaatgaacttaatttgtcgggtgaagaacagctagaggcgctgcgtcgccgcctgcgc
gcgatggagcgtgatgggcaattggtctttacccgtcgtcagtgctacgccttaccggag
cgcctggacttattgcgcgggactgttattggtcatcgtgatggctttggtttcttacgg
gttgaaggcagtaaagacgacctgtacctctcagccgagcaaatgaaaaccgcgattcat
ggcgatgtggtattggcccaacctgttggtgctgaccgcaaaggtcgtcgtgaagcgcgt
atcgtgcgcgtgttagtaccgaaaaccagccagattgtcgggcgttattttactgatgcg
ggtacgggttttgtggtgccggatgatggccgcttgagttttgatattctgatcccacca
gatgccatcaatggcgcgcggatggggtatatggtggtggtcgagttgacccagcgcccg
acccgccgtactaaagctgtgggtaagattgttgaagtgctcggtgagaacatgggtacc
agcatggcggtagatattgcgctgcgcactcatgagatcccacatacctggccgccacaa
gttgaaaaacaagttgctgacctgaaagagcaagtgccggaagaagcaaaaaaagggcga
gtggatttacgcaatctacccttagtgactattgatggtgaagatgcccgcgactttgat
gatgcggtttactgcgagaaaaaacgcggtggcggctggcgcttgtgggtggcgattgct
gatgtcagttattatgtgcgaccgcgcactgcactggatgatgaagctcgcagccgtggt
aactcggtttacttcccgtcacaagttgtcccgatgctgccggaagtgctgtcaaacggc
ctttgctccctgaatccgcaggtagaccgcctgtgtatggtgtgtgagatgaccatctcc
gcacagggcaagctgtcgtcgtataagttctacgaagcggtgatgagctcgcacgcgcgt
ctgacctacaccaaagtatggcgaatcattgatggtgaagaatcactgcgcgagcaatat
aagccgctggtgccacatctgttagaactgcataccatgtacaaggcgctggatcaggct
cgtgctgagcgtggtggtattgcattcgagaccgaagaagccaagtttatctttaacgct
gaacggcgtatcgagcgtattgagtcgacggtgcgtaatgacgcgcataagttgattgaa
gagtgcatgattctggcgaatatcgccgccgcgcggtttgtggaaaaacataacgaaccg
gcgctgttccgggtgcatgaccgcccaagtgatgaccatatttcagcgctgcgtagtgtg
ctcagtgagctgggtctgacactgggtggtggtttgaaaccagagccaaaagattatgca
gtgctgatggatgaagttgcggatcgtccggatcatgaaatgctgcaaaccatgttgctg
cgttcgatgaaacaggcgatttacgatccggaaaaccgtggtcactttggtttggcgttg
gcgtcttatggccactttacctcacccattcgccgttaccccgatttggccatgcaccgg
gctatcaagtaccagcttgccaaagagcacggcaatgtgaaagagcgctggacaccaacc
ggtggctggcacagtgagtacgaagatatgctgcaattgggcgaacattgctcaatgact
gaacgccgtgctgatgaagcgactcgtaatgtcgcagattggctgaagtgtgattttatg
caggatcaggtggggaaagtcttcactgggattattgccagcgtcaccggctttggtttc
ttcgtccgcctggatgatttgtttattgatggtttggtacatgtctccagtttggataat
gactactatcgttacgataacattggtcagcgtttgatcggtgaatcctcaggtcaggtt
taccggttgggtgataccgtggaaatccgggttgaggcggtacacatggatgagcgcaaa
attgattttgctctggtctccagtacccgtaaaccgcgcggtgaaggcaaaacggcgcgt
gataaagccaagaaagccgatggtcagcgcactatgcgcgatacctccactggccgtggc
ggtcgtggtagttcatcgagctcatcgagttcatcacgtcgtgatagcgcgccagcagga
agtgggcagaaacgccctcgtcgtgctaaaaaaccggcaaactttgagccagatagtgct
ttccgtccggcagatgccgccgctaagttagatgacaaagcgttggccgagaaaaaggcc
aaagctaaagcgaaaagagcatccgccaagaccaagaaaattgctgctgccaccaaggcc
aagcgcgcgaagaaaaaaaccagcagtgaccaataa
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