Yersinia enterocolitica (type O 5) YE53/03: YE5303_35941
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Entry
YE5303_35941 CDS
T03739
Symbol
hopD
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
yee
Yersinia enterocolitica (type O:5) YE53/03
Brite
KEGG Orthology (KO) [BR:
yee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yee03032
]
YE5303_35941 (hopD)
03036 Chromosome and associated proteins [BR:
yee03036
]
YE5303_35941 (hopD)
03400 DNA repair and recombination proteins [BR:
yee03400
]
YE5303_35941 (hopD)
DNA replication proteins [BR:
yee03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
YE5303_35941 (hopD)
Chromosome and associated proteins [BR:
yee03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
YE5303_35941 (hopD)
DNA repair and recombination proteins [BR:
yee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
YE5303_35941 (hopD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
CCQ41643
LinkDB
All DBs
Position
complement(3600650..3600922)
Genome browser
AA seq
90 aa
AA seq
DB search
MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVRERSARTG
RNPQTGKEISIPAAKVPGFRAGKGLKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaataagtcacaactgatcgacaaaattgccgcaggtgctgatatttctaaagcggcc
gctgggcgcgcattggatgcaattattgcttctgttactgaatctttgaaagaaggagat
gacgtagctctggttggttttggtacttttgcagtacgtgagcgttctgcacgtactggc
cgtaaccctcagacaggcaaagaaatcagtattccagcagccaaagtaccaggcttccgt
gccggtaaaggcctgaaagacgctgtaaactga
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