Yersinia enterocolitica (type O 5) YE53/03: YE5303_36421
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Entry
YE5303_36421 CDS
T03739
Symbol
sbcC
Name
(GenBank) exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
yee
Yersinia enterocolitica (type O:5) YE53/03
Brite
KEGG Orthology (KO) [BR:
yee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yee03400
]
YE5303_36421 (sbcC)
DNA repair and recombination proteins [BR:
yee03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YE5303_36421 (sbcC)
Archaeal homologous recombinant proteins
YE5303_36421 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ABC_tran
AAA_21
cobW
SMC_N
nSTAND3
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
CCQ41691
LinkDB
All DBs
Position
3653239..3656928
Genome browser
AA seq
1229 aa
AA seq
DB search
MRILSLRLKNINSLQGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR
LNVTPSQNELMTRHTAESLAEVEFEVKGTRYRAFWSQRRAKNSPEGNLQAPKVELALCEN
GKILADKVRDKLDMVAAITGLDFGRFTKSMMLSQGQFAAFLNADANDRAELLEELTGTDI
YGRLSEHVFEQHKQAKIALDALHQRASGIELLNEEQRADLAQQLEVLGEQEKQLASEQRV
NQKQINWLTGWQQQQKNVLEYQQQQKIIEQEYLQVQPELQRLARSEPAEKLRPLLRECSR
SLRDLQQIQLRITTLTQQQQQLQTQLTPLAQALEQANLARQQHETNQHEQEILIEQKVVP
LDNLIAQQQHSLMLLGTQLEQLRTKEKQSKQQLELNEQQFKLAHQRLQQLTEYTQQHAHH
QHWEKNLPLWREQFRQLQMQQQQSVESEQQLQQQATLLATLQQQIDTLNEQDKQQQAALV
QAHSQTGSIQQQLSALEQQQPSAQLRQQLIELQQQRPVRQQLAALSPLAQQVQALHDKQQ
QQFVAQQQQLQLLEQQLAEKRQLYKQHKQHLTDLETLLEREKQIVRLESERAKLQPGEKC
PLCGALDHPAITEYQAVKPSETAVRVEELRLQVEQLFTAGTELRTQVASMQQQQLHLEQE
LQHSNQQLADYQQQWQTLTQPLTLTFALNEPETLITWLEQQEQSEQTCQLKLAEYERLNQ
QYQQAKDILTQAEQQQQKHQQQLALMSQRRQDAEQAHQKLHAQHQHQLVELVKTRQGFSH
ALAELSLSMPEADQQQSWLALREEENQRWHQYQQEQQQLALGQKALETQIENERRHLQEC
IDQLSILTQQYQQIETLLQQQKQQRQVLFGDRSVVEARQLLRQQQQKVELAQQNTAQALQ
QAQSQLNLLSGELTGLEQQCKQNQQRVTTAQAELRQALASSEFDDEAALTAALLSEEERQ
RLQQLQQQLSERQQQANIRHQQASEALAQLIQSCPDGVDQTSELAVLQRQSEQLLAQLKA
NTLRQGELRNQLESDIIRRRNQHALFEQIEHSQQQYDDWSYLNHLIGSKEGDKFRKFAQG
LTLDHLVYLANNQLSRLHGRYQLQRKTSDALELQVVDTWQADAIRDTRTLSGGESFLVSL
ALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDTALDALDSLNASGKTIGVISHVEAMK
DRIPVQIKVKKVNGLGVSRLDNIFRVNQD
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagaattttaagtctacggctgaaaaacattaattctctacagggtgaatggaagata
gatttcaccgccgaaccttttgccagcaacggtttattcgcgataaccggcccgactggg
gcagggaaaaccaccctgctcgatgccatttgtctcgcgttataccaccagaccccgcgg
ttgaatgtcacccccagccaaaacgaactgatgactcgccacacggcggagtcactggct
gaagttgagtttgaggtaaaaggaacgcgttatcgtgctttctggagccaacggcgcgct
aaaaatagcccggaaggaaatctgcaagcgcctaaagttgagttggcgctatgcgaaaac
ggcaagattctagccgataaagtgcgcgataagcttgatatggttgccgcaatcacaggg
ctggattttggccgctttaccaaatcgatgatgctgtcacaggggcaatttgctgcattt
ctcaatgctgatgccaatgatcgcgcggaattattggaagagttaaccggcacggacatc
tatggtcggttgtctgaacacgtatttgagcaacataagcaagccaagatcgcactggat
gcattgcatcaacgcgccagcggtattgaactgctaaatgaagagcagcgtgcagatctg
gcgcaacaattagaggtactcggtgaacaagaaaagcagcttgcttcagaacagcgggta
aatcaaaagcaaataaattggctcaccggatggcagcaacagcaaaaaaatgtgttggaa
tatcaacagcagcagaaaatcattgagcaagaatatctgcaagtacaacccgaactgcaa
cgattggcccgtagtgaaccagcagaaaagttacgccccctattacgcgagtgttcccgt
agcctacgggatttgcagcagatacaactgcgcatcaccacactgacgcagcagcaacaa
caacttcagacacaactgacgccactagctcaggcgctggagcaagccaatcttgcccgc
cagcaacacgaaactaatcaacatgagcaagaaatactgatcgagcaaaaagtcgttccg
ctggataaccttattgctcagcagcagcactcattaatgctactaggtacgcaactggag
cagttacgcaccaaagaaaaacaaagtaaacaacaacttgaactgaatgaacaacagttc
aagctagctcaccagcgcctgcaacaactgactgagtacacccagcagcatgcccaccat
caacactgggaaaaaaacctacctttgtggcgtgagcagttccgccaattacaaatgcag
caacagcaatcagttgaaagcgaacagcagttgcaacagcaggccacgttactggcgacc
ttacaacagcaaattgacacactgaatgaacaagataaacagcaacaagctgcattagta
caagcccactcgcagaccggtagtattcagcaacaattgtcagcacttgagcaacaacag
ccctccgcgcagttacgccagcaactcatcgagctacaacaacaacggccggtgcgacag
caattagcggcattatcgccattggcgcagcaagttcaggcgttgcatgataaacagcaa
cagcagtttgttgcccagcagcagcaactacaattactcgaacaacagctagcagaaaaa
cgtcagttatataaacaacacaaacagcatctgactgatctggaaactttgctggaacgc
gaaaaacaaatcgtccggttagagtctgaaagagccaaactgcaaccgggagaaaaatgt
ccgttatgtggggcattagatcacccagccattactgagtatcaggcggtaaaaccctca
gaaaccgctgtgcgtgtagaagaactgcgacttcaggttgagcaacttttcactgcagga
acagaattacgcactcaggtcgcaagcatgcagcaacaacaactgcatctggagcaagaa
ttacagcacagtaatcagcaattggcggattaccaacaacagtggcaaacactgacccaa
ccattaacgctaacatttgcgttgaatgaacctgagaccttaataacctggttggaacaa
caagaacaatcagagcaaacctgtcagctaaaactggcggaatatgaacgattgaatcaa
caatatcaacaagctaaagatattctgactcaagcagaacagcagcagcaaaaacatcag
cagcaattggccctaatgagtcagcgccgacaagatgccgagcaagcgcaccaaaagttg
catgcacaacatcaacaccaactggttgaattggtaaaaacacgtcagggctttagccat
gctctggctgaattatcgctatcaatgcctgaagcagaccaacaacagagctggctggca
ctgcgggaagaggaaaatcaacgctggcaccagtatcagcaggaacaacaacagttggcg
ctggggcaaaaagcactggaaacgcaaattgaaaatgaacgtcgccacttgcaagagtgt
attgatcagttgtccatactcacacaacaatatcagcaaattgagacactgttgcagcaa
caaaagcaacaacgtcaggtgctatttggtgaccgcagcgtggttgaagcccgccagtta
ttgcgccaacaacagcaaaaagtagaactggcccaacaaaatacagcacaagccctgcaa
caggcacaatctcaacttaacttgctctccggcgaactgacggggctagaacagcagtgc
aaacaaaatcaacaacgagtcactacagcccaagctgaattacgacaagcactggcaagt
agtgaatttgatgatgaggcagccttaaccgccgcgctcctgagtgaggaagaaaggcag
cgtttgcagcaattgcaacagcaactgagtgagcgccagcaacaggccaatatccgtcac
caacaagccagtgaagcattggctcaactgatacaatcttgccctgatggcgtcgaccag
acatctgagttggcggtattacagcggcaatcagaacaattactggctcaactgaaagcc
aataccttacggcaaggtgagttacgcaatcagctagaaagcgacataattcgccgccgc
aaccaacatgcactgtttgagcaaattgaacatagccagcaacaatatgatgactggagc
tatctcaatcacttaattggctctaaagaaggtgataaattccgcaagtttgcccaaggc
ttgacactcgatcatttggtctatctggcaaacaaccaactcagccgcctacatgggcgc
tatcaattacagcgtaaaaccagtgacgcgctggaactacaagtggtggatacctggcaa
gcggatgctatccgtgacacccgcaccttgtcagggggagaaagcttcctggtcagctta
gctctggctttggcgctatcagatctggtcagccataaaaccagtattgattccctattt
ctcgatgaaggcttcggtaccttggatgcagagacactggatacggcactcgatgccctt
gatagcctgaatgcatcgggtaaaaccattggagttattagccatgtcgaggcgatgaaa
gacagaatcccagtgcaaattaaagtgaaaaaagtcaacggattgggtgttagccgctta
gataacatcttccgagtcaatcaagactaa
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integrated database retrieval system
