Yersinia enterocolitica (type O 5) YE53/03: YE5303_43531
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Entry
YE5303_43531 CDS
T03739
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yee
Yersinia enterocolitica (type O:5) YE53/03
Pathway
yee03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yee00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
YE5303_43531 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yee03021
]
YE5303_43531 (rpoC)
03400 DNA repair and recombination proteins [BR:
yee03400
]
YE5303_43531 (rpoC)
Enzymes [BR:
yee01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
YE5303_43531 (rpoC)
Transcription machinery [BR:
yee03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
YE5303_43531 (rpoC)
DNA repair and recombination proteins [BR:
yee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
YE5303_43531 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CCQ38692
LinkDB
All DBs
Position
340084..344304
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESTSRTSIIDTTVGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGTADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMIDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAQGEAPV
VPQVSADEATANLAELLNAGFGNSKD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcctggtcattcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgcggtgttatttgtgagaaatgcggcgttgaagtgactcaaaccaaagtacgccgtgag
cgtatgggtcacatcgaactggcttctccgactgcgcacatctggttcctgaaatcgctg
ccatcccgcatcggtttgctgttggatatgccattacgtgacatcgaacgtgtactgtac
ttcgaatcctatgtggttgttgaaggcggtatgaccaacctggaacgtcgtcagatcctg
actgaagagcagtatctggacgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaagctattcaggccttgttgaaaaacatggatctggaagcagagtgcgagatc
ctgcgcgaagaattgaacgaaacaaattctgaaaccaagcgtaagaagctgaccaagcgt
atcaagttgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgctgcctgtgctgccgccagatctgcgtccattggttccgttagatggcggtcgtttt
gcgacttctgatctgaacgatttgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggacttggctgctccggacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcagtagatgcattgctggataacggccgtcgcggtcgtgcgattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggccgttcggttattaccgttggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggctcttgagctgttcaaaccgttc
atctacggcaagctggaattgcgtggtcttgctaccaccattaaagccgccaagaagatg
gttgagcgtgaagaagcagttgtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgctgaaccgtgcaccaacccttcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaatccagttgcacccactggtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggctgttcacgtaccgctgacactggaagctcagttagaagca
cgtgcgttgatgatgtctaccaacaacatcctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtattacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtactgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcatctctgcatgcgcgggtaaaagtccgtattactgaagaaattcgtaataccgaa
ggcgaaagcacttcgcgtaccagcattatcgatacgactgtaggtcgtgctattttgtgg
atgatcgtcccgaaaggcctgccttactctatcgttaatcagccgctgggcaaaaaagct
atctccaagatgctgaacacctgttaccgcatcctgggcttgaagccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagaagcgaaagcagggatcatcgaagaagctgaaactgaa
gttgccgagatccaggaacagttccaatccggtctggtaacagcaggcgaacgttataac
aaagtgatcgatatctgggccgcggctaacgaacgtgttgccaaggcgatgatggataac
ttgtctgtagaagatgttgtcaaccgtgacggcgttgtcgaacagcaagtatcattcaac
agcatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagcta
gcagggatgcgtggtctgatggctaagccagatggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaactgcgaactccggttacctgactcgtcgttta
gttgacgtggcacaggatctggtcgtaaccgaagacgattgtggtacccataacggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagaaccactgcgcgatcgcgttctg
ggtcgtgtgaccgctgaagaagttatcaagccgggtacggctgatattctggttccgcgt
aacaccctgttggacgaaaaatggtgtgatctgttagaagaaaactccgtcgacagcgtt
aaagttcgttcagtagtaagctgtgaaactgactttggtgtgtgtgcaaactgctatggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcggttggtgttattgcagca
cagtccattggtgagccgggtacccagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagagtccagcattcaggttaagaacaaaggcagcttgaaactg
agcaacgtcaagttcgttaccaatgcagcgggcaagctggttattacttctcgtaatacc
gagctgaaactgatcgacgaattcggccgtactaaagaaagctacaaagtgccttacggt
gctgtaatggctaaaggcgatggcgcagaagtccagggcggcgaaaccgttgctaactgg
gatccgcacatcatgccagttgtgaccgaagtgagcggtttcatccgcttcgcggacatg
attgacggccagaccattacacgccagaccgacgaactgactggtttgtcttctctggtg
gtattggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgccaaaggtgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgtacagctggaagacggtattcagatcggtgcgggtgatacc
ctggcgcgtattcctcaggaatcaagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagcctgcaatcctggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaagcgccgtctggttatctcaccgttg
gatggtagcgatgcatacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaaattgtagaacgcggtgacgtggtttccgatggcccagaatctccacacgacatt
ctgcgtctgcgtggtgttcacgcggtaactcgttacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcactatcgttgatgcaggtagcaccgacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtaagctggcagctgaaggcaaaatcgaggct
acgtttacacgtgacctgctgggtatcaccaaggcatccttggcgaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcagttgccggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgtatgcgccgtaaagcacagggtgaagcaccagta
gttccgcaagtgagcgcggacgaagcgactgctaacctggctgaattgctcaacgctggt
tttggtaacagcaaagactaa
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