Yersinia enterocolitica FORC_002: FORC2_0396
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Entry
FORC2_0396 CDS
T03890
Name
(GenBank) regulatory protein CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
yef
Yersinia enterocolitica FORC_002
Brite
KEGG Orthology (KO) [BR:
yef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yef03019
]
FORC2_0396
Messenger RNA biogenesis [BR:
yef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FORC2_0396
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Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GGDEF_2
DUF4501
Motif
Other DBs
NCBI-ProteinID:
AKF36543
UniProt:
A0A9P1V4F3
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Position
459012..460931
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AA seq
639 aa
AA seq
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MRFTTKLSVFMTLLVVLAMCLVLLGSTASFFYLCQKKMEHRLQSIVTAYDQSLLLQPADK
EREWLPIMMRTLGVLEVSVQNENSTLYQLKLPAIYAPWNSQNHHRSLVVPMLHQPGASMH
FTYIDPLNSYARSLYAAAILSLAVVIIAITLLLSFRWLREQTAGQEKLEWRAKRILNGER
EHAINSDGHEWPPCASRAIDHLLAELIEVREERNRVDTLIRTFAAQDAKTGFSNRQFFDN
QLTTQLEEPGAHGVVMMVQLPDFDSLIETDDHQKVQELMHSLINLLSTFVTRHPSALLAR
YHHSDIAILLPHKTLKDADVIAAQLVHALGALPAPQIIDRESLLHIGIVAYRNGDSAEQI
MDNAGQATKNAAMYGGNGWYVYDTRVAEKGRGSVKWRTLLEQTLANGGPRLYQKPVVTVD
GKIHHREIISRIYDGEQELRAAEFTPLVQLFGLGERYDRQKIDRIIPLLALWPDETLAFS
ISVDSLLQRPFQRWLRDTLLQCRKSDRERIIFELAEADVCQYISQIRPMMRLLLGVGCKV
MVSQAGLTVVSTSYIKSLRVEMIKLHPGLVRSINLRYENQLFVESLTGACAGTRAKVFAA
EVLTRQEWQTLKEKGVYGGQGNFFAPPTLLNPGKKKYSY
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttacaaccaaactttctgtatttatgaccttgttggtcgtattggcgatgtgc
ttagtgctactgggtagcacggcaagtttcttttacttatgccagaaaaaaatggagcac
cgcctccagagcattgtgacagcttatgatcagtcattgctgttacaacctgctgataaa
gaacgcgaatggctaccaatcatgatgcgaacgctaggtgtgctggaagttagcgttcag
aatgaaaacagtacgttgtaccaactaaaactccctgccatttatgccccctggaacagt
caaaaccaccaccgtagcttggttgttcctatgttgcatcagccgggggcctcaatgcat
ttcacttatattgatcccttaaacagctatgcccgctccctttacgccgccgctatttta
tcgttggcggtggtgattattgcgataacgctgttgctgagtttccgttggttgcgtgaa
cagaccgcaggtcaggaaaaacttgagtggcgggctaagcggatcctgaatggcgaacgt
gagcacgccattaatagtgacggccacgaatggccgccttgtgccagccgtgctatagac
catctattggctgagctgatagaagtaagagaagagcgtaatcgcgttgatacattgatt
cgtacttttgccgcacaggatgccaaaaccggcttcagtaaccgccagttttttgataat
cagttaacgactcaattggaagagcctggtgctcatggtgtggtaatgatggtgcagtta
ccggactttgacagcttaattgaaacggatgatcaccagaaagtgcaagaactgatgcat
tcgctgattaacctactttcgacttttgttacccggcatccctctgcgttattggctcgt
tatcatcacagtgatatcgcgattttactcccccataaaacgctaaaagacgccgatgtt
atcgctgcgcaattggtgcatgcgcttggggcattgcctgcaccacaaattattgaccgt
gagtcactgctgcatattggcattgtggcgtaccgcaatggcgattccgctgagcagata
atggataatgctggacaagcgaccaaaaatgcggcgatgtatgggggtaacggctggtat
gtctatgatacccgcgtagcagaaaaaggccgtggtagtgtcaaatggcgcactttatta
gaacaaacgctggctaatggtggccctcggctttatcagaaaccggttgttactgttgac
ggtaaaattcaccaccgagaaataattagccgcatttatgatggcgaacaagaattgcgc
gccgctgaatttacccctctggtgcaattgttcggtttgggtgagcgctatgaccgccag
aaaattgatcggataattcctttattagctttatggccggatgaaactctggcattttct
atcagcgttgattcattattgcagcgtcctttccagcgctggctgcgggatacgctgttg
caatgtagaaaatcagatagagagcgaattatctttgaacttgcagaggcagatgtgtgt
caatatatcagccaaatccgcccgatgatgcgtttattgctgggtgtgggttgtaaggtc
atggtgtcgcaggccggattgacggtggtcagtacgtcatatattaagtctcttcgggtt
gaaatgataaaacttcatccgggattagttagaagtattaatttacgttatgaaaatcag
ttgtttgtcgagagcctaaccggtgcttgcgcgggaacgcgtgcaaaagtttttgcggca
gaagttcttactcgtcaagaatggcaaacgctgaaggagaaaggtgtttacggtggacag
ggcaatttttttgctccgccaacgcttttaaaccctggaaagaaaaaatattcgtattag
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