Yersinia enterocolitica FORC_002: FORC2_0570
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Entry
FORC2_0570 CDS
T03890
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
yef
Yersinia enterocolitica FORC_002
Pathway
yef02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yef00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FORC2_0570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yef03021
]
FORC2_0570
Transcription machinery [BR:
yef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FORC2_0570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
DNA_ligase_A_N
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AKF36717
UniProt:
A0A0E1NF11
LinkDB
All DBs
Position
complement(654160..655998)
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTA
THVGSELSTEEMDDDDDEDEDDEEEEDDNSIDPELARQKFSELREQYENARLEIKKNGRS
HANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKN
FVTLFASNETSDTWFAAAIAMGKPWSEKLKDVSDDVQRSLQKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggcatacaggtgctggaagaagcccct
gatgccgatgatttaatgctggccgagaacaccactgataccgacgatgacgcggctgaa
gctgctgcacaggtgttgtccagtgttgaatccgaaatcgggcgtacaaccgacccggtg
cgtatgtacatgcgcgaaatgggtaccgttgagctattgacgcgtgaaggcgagattgat
attgccaaacgtatcgaagacggtatcaatcaggtccagtgctcagtggctgaataccct
gaagcgattacttatctattggaacaatatgatcgcgttgaggcgggtgaagctcgtcta
tcggacctgatcaccggctttgttgatccaaacgccgaagaagatattgcgccgactgca
actcacgtgggttctgaattatccactgaagaaatggatgatgacgacgacgaagatgaa
gacgacgaagaagaagaagacgacaacagcatcgatccagagctggcacgccagaaattc
agcgaattgcgtgagcagtacgaaaacgcacgtttggaaatcaagaagaatggtcgtagc
cacgccaacgctgctgctgagattctgaagctttctgaagtgttcaaacagttccgcctg
gtaccgaagcagttcgactatctggtcaataacatgcgtgccatgatggaccgcgttcgt
actcaagaacgtatcatcatgaaactgtgtgttgaacagtgcaaaatgccgaagaagaac
ttcgttaccctgtttgccagcaatgaaaccagcgatacctggtttgcagctgcaattgct
atgggtaaaccatggtctgaaaaactgaaagatgtttcggacgatgtgcaacgtagcttg
caaaaactacgtcagatcgaagaagaaaccggcctgaccattgagcaagtgaaagacatc
aaccgccgtatgtctatcggtgaagcgaaagcgcgtcgcgccaagaaagaaatggttgag
gctaacctgcgtctggttatctctattgcgaaaaaatacaccaaccgtggcttgcagttc
cttgatttaattcaggaaggcaatatcggtttgatgaaagcagtagataaattcgaatac
cgccgtggttataagttctcaacctatgcaacttggtggattcgtcaggctatcacccgc
tctatcgcggaccaggcacgtaccatccgtattccggtgcatatgattgagaccattaac
aaactcaaccgtatttcgcgccagatgctgcaagagatgggccgcgagccaacgccggaa
gagttggctgaacgcatgctgatgccggaagacaaaatccgtaaagtattgaagattgcg
aaagagccaatctcaatggaaaccccaatcggtgatgatgaagattcacatctgggcgat
ttcattgaagataccactctggagctgccgctggactctgccacctctgagagcctgcgt
tctgccactcacgacgtgttagctggcctgaccgcacgtgaagcgaaagttctgcgtatg
cgtttcggtatcgatatgaacactgaccacactctggaagaagtgggcaaacagttcgac
gttacccgtgagcgtatccgtcagatcgaagctaaggcactgcgtaaactgcgtcaccca
agccgctctgaagtgctgcgcagcttccttgacgattaa
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