Yersinia enterocolitica FORC_002: FORC2_2111
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Entry
FORC2_2111 CDS
T03890
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
yef
Yersinia enterocolitica FORC_002
Brite
KEGG Orthology (KO) [BR:
yef00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yef03019
]
FORC2_2111
Enzymes [BR:
yef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FORC2_2111
Messenger RNA biogenesis [BR:
yef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FORC2_2111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
NACHT
nSTAND3
T2SSE
PhoH
AAA_25
AAA_23
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AKF38258
LinkDB
All DBs
Position
complement(2391630..2395472)
Genome browser
AA seq
1280 aa
AA seq
DB search
MLRDQQRMRRRLQGARKVHNPEAVEAITREIETEIATAMQRVNSRRAACPAISYPENLPV
SQKKQDIYNAIRDNQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVA
NRIADELDTSLGGCVGYKVRFNDQVGENTLVKLMTDGILLAEIQQDRLLMQYDTLIIDEA
HERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSSHFNNAPIIEVSGRTYPVEVR
YRPIVDDADDVERDQLQAIFDAVDELGRESPGDILIFMSGEREIRDTADALMKQNLPHTE
VLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSFRTK
VQRLPIEPVSQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQ
MTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIQTASNGHQQLTPLGRQLAQLPVDP
RLARMVLEAQKSGSVRELMIITSALSIQDPRERPMDKQQASDEKHRRFADKDSDFLAFVN
LWDYLKEQQKELSSAQFRKLCRSDFLNYLRVREWQDIYTQLRQVVKELGIPVNSVAADYR
SVHTAILTGLLSHIGQKDVEKQEYTGARNARFAIFPGSGLFKKPPKWCMVAELVETSRLW
GRIAARIEPEWIEPLAQHLVKHHYSDPHWEKAQGAVMASEKVTLFGLPIVTERKINYGPI
DPPLCRELFIRHGLVEGDWQTRHAFFRANLKLLAEVEELEHKSRRRDILVDDETLFNFYD
QRISRDVISARHFDSWWKKTSQTQPELLNFEKTMLIKDGANKVNPLDYPNFWYQGALKLR
LSYQFEPGTDADGVTVHIPLPILNQVQEEGFDWQIPGIRRELVVALIKSLPKPVRRNFVP
APNYAEAFLARVTPLETSLLDALERELRRMTGVTVSRESWQWEQVPDHLKMTFRVLDDKN
RTLREGKDLAALKLQLQDKVQETLSAVADDGIEQNNLHIWSFGSLPVCYEQRRGGYEVKA
YPALVDEKDSVAIRLFDTEAQQQQAMWQGTRRLLLLNIPSPIKYLHEKLPNKSKLGLYFN
TYGKVMDLIDDCIACGVDKLVAQYGGPVWQEADFAQLQEKVRAELNDTVVDIAKQVEQIL
TTVFSINKRLKGRVDISQALALSDIKAQLGGLIYRGFVTNNGWKRLPDTLRYLHAIERRM
EKLAVDPHRDRAQMQRVEHVQQMWQQWLNKLPPKRQQDEDVKEVRWMIEELRVSLFAQQL
GTPYPISDKRILQTIEQLSA
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgctccgtgaccaacagcgtatgcggcgtcggctgcaaggcgcacgaaaagtccataat
cccgaggccgtagaggcgattacccgcgaaatcgaaactgagattgccactgcaatgcag
cgggttaacagtcggcgggcggcgtgtccggctatctcgtatcccgagaatttgccggtc
agtcagaagaaacaagatatctataatgctattcgcgataatcaggtggtgattgttgcc
ggtgaaaccggttctggtaaaaccacacaattaccgaaaatctgcctggagttagggcgt
ggtgtcaaaggacttattggtcatacccagccgcgccgccttgccgcgcgtaccgtggca
aatcgtattgctgatgagctagacacctcactgggcggctgtgtcggttataaagtgcga
tttaatgatcaagtgggtgagaacacccttgttaagttgatgactgacggtattttgctg
gctgaaattcagcaagaccgtctgctgatgcaatatgacaccttgattattgatgaggcg
catgagcgcagcctgaacattgatttcatcttggggtatttgcgggagttattgccaaag
cgccctgatctgaaagttattatcacttcggcgaccattgatccgcagcgcttttctagc
catttcaataatgcgcccattatcgaagtctctggccgtacctatccggtggaagtgcgc
tatcggccgatcgtggatgatgccgatgatgttgagcgtgatcagttacaggccattttt
gatgcggtagatgaattggggcgtgaaagccccggcgatatcctgatatttatgagtggc
gagcgggaaattcgtgatactgctgacgcgctgatgaagcagaatttgcctcataccgaa
gtgctgccgctgtatgctcgcttatccaatagtgagcagaatagggtgtttcagtctcat
catgggcggcgcattgtgctggcgactaacgtggcggaaacttcactcaccgtgccgggc
attaagtatgtcatcgatcccggaactgcacgtattagccgctatagtttccgtactaaa
gttcaacggttgccgattgaaccggtttctcaagcctcggctaatcagcgtaaaggccgc
tgtggccgtgtctctgacggtatctgtatccgtctttattccgaacaagatttcctttca
cgccctgaattcactgatccggaaattctgcgtaccaatttggcctccgttatcctgcaa
atgacctcattagggttaggggatatcgcggccttcccatttgtggaagcaccggacaag
cgcaacattcaagatggtgtgcggctgctggaggagctaggggctatccaaacggccagt
aacggccatcaacaattaacaccgctaggtcgtcaattggcccaattaccggttgatccc
cgtttggctcgaatggtattggaagcccagaaaagtggcagtgtgcgggaattgatgatc
atcacctcggcattgtctatccaggatccgcgtgaacgtccgatggataaacaacaagcc
tctgatgaaaaacatcgacgttttgccgataaagactctgatttccttgcatttgttaat
ctatgggattacctgaaagagcagcaaaaagaactatcatcggcgcaattccgtaaatta
tgccgtagcgatttcctgaactatttgcgggtgcgcgaatggcaggatatctatacccaa
ctgcgtcaggtggtgaaagagctgggtattccggtcaatagcgtcgccgcagactatcgc
agtgtccatacggccattctgaccggattactatcacatatcggccagaaagacgttgaa
aagcaagagtatacaggtgcgcgcaatgcccgttttgccatcttcccaggctccggttta
ttcaaaaaaccgccaaagtggtgcatggtggccgaattggtcgaaaccagccgcttatgg
gggcgcattgctgctcgtatcgaaccggaatggatcgaacccttggcacagcacttggtt
aaacatcactatagcgacccgcattgggagaaagcgcaaggggcggtgatggccagtgag
aaagtgaccttattcgggttgcctatcgtcactgagcgcaagatcaactatgggccaatt
gatccgccgctgtgtcgcgagttatttatccgtcatggcttggttgaaggggattggcag
acgcgccatgctttcttccgcgctaatttaaagctattggctgaagttgaagaattggag
cacaaatctcgccgccgcgacattctggttgatgacgagacattgtttaacttctatgac
cagcgtattagccgtgatgttatttccgcacgtcattttgatagctggtggaagaaaacc
agccagacccagccggagttgctcaactttgaaaaaaccatgcttatcaaggatggtgca
aacaaagttaacccattggattatccgaacttttggtatcaaggggcactcaaactacgg
ctttcctatcaatttgaacccggtacggatgctgatggggtcactgtccatatcccgctg
cctatcctgaatcaggttcaggaagaggggtttgactggcaaattccggggatccgccgt
gagctggtggtggcgttaatcaagtcattacctaagccggttcgccgcaattttgtgccg
gcgcctaattatgccgaggcattcttagcacgggtaaccccgttggaaaccagtctgctg
gatgcattagagcgcgagttacgtcgcatgactggggtgacagtgtcacgcgaaagctgg
cagtgggagcaagttcccgaccacctaaaaatgacgttccgcgtgctggatgataaaaac
cgaactttgcgtgaggggaaagaccttgctgccttgaagctccaactccaggataaagta
caagagactctctcagcggttgccgatgacggtattgagcaaaataacttacatatctgg
agcttcggctcacttccggtgtgctacgagcaacgccggggaggatacgaagtcaaagca
tacccggcattggtggatgaaaaagacagtgtcgcgattcgcttatttgacacagaagcc
cagcagcaacaggccatgtggcaggggacacgccgtttattgctgctaaatatcccttct
ccgattaagtatttacatgaaaagttgccgaacaaatccaaactcggtctctatttcaat
acttatggcaaagtgatggatctaattgatgattgcattgcttgtggggtggataaactt
gtcgcgcaatatggtgggccggtatggcaagaggctgatttcgctcagctacaagaaaaa
gttcgggccgaattaaacgatactgttgtggatattgccaaacaagttgaacagatcctg
actaccgtattcagcattaataaacgtttaaaaggtcgggtcgacatctcgcaagcatta
gcgctttccgatatcaaagcacagcttggcggcctgatttaccgcgggtttgtcaccaat
aatggttggaaacgcttaccggatacattgcgctatctgcacgccattgagcgacggatg
gagaagttagccgtagatcctcatcgtgatcgtgcccaaatgcaacgggtggaacatgta
caacagatgtggcagcaatggctcaacaaattgccgcctaaacgtcaacaagatgaagat
gttaaagaagttcgttggatgattgaagagctacgcgtgagtctatttgcccaacaattg
ggaacaccataccccatatcagataagcgtattttacagactatcgaacaactttctgct
taa
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