Yersinia entomophaga: PL78_03070
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Entry
PL78_03070 CDS
T09771
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
yeg
Yersinia entomophaga
Pathway
yeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PL78_03070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yeg03019
]
PL78_03070
03009 Ribosome biogenesis [BR:
yeg03009
]
PL78_03070
Enzymes [BR:
yeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PL78_03070
Messenger RNA biogenesis [BR:
yeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PL78_03070
Ribosome biogenesis [BR:
yeg03009
]
Prokaryotic type
rRNA processing factors
PL78_03070
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ANI28822
UniProt:
A0ABM6BHG1
LinkDB
All DBs
Position
complement(668144..671695)
Genome browser
AA seq
1183 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADALQWD
LSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLAKEH
IAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRL
RDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI
LRLIEEEALKENTHEVHAIVPVQIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQTPH
YSVLRVRKGEEVPTLSYLLPKLHEEEMAQPLEEAPMERKRPEQPALATFSLPTEVPPEAE
PAAAAKPAVQPAKAAVSAAQPGLFSRLISGLKSLFAAPAEAEVKPAVVEKTENTDNRRQD
RRNPRRQNNGRKDRGDRTPREGRENTRENARDNGNRDANRDNRDIREGREGREDQRRNRR
SNQQNTAVEATVENRDNDKAPREEQQPRRERGDRQRRQRQNPQEVKAAEVVESVVAVNLV
EEVQPEQEERQQVMQRRQRRQLNQKVRIQSANDELNPADTASEKTPVVKIAEQTAAPVVA
QEEVKLLAPAADEDNGNDRSANNENGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSAMP
LAGAFASPEMASGKVFIRYPVALPQEQQVAEPAAENIAENLNTQAAETPAVIAAPAVTTG
QANSVAASPAIEQTVAVPAVVAEPAVIEAPKAEKPVEAFTPAPAAYKHQPGGSSSSAAAV
PGRAPVAAPVVEAPVVKTVAVETAEVKTVEMETAGVETTKAETPVNQPAAQAVVQPEVTA
QPAVEEIAAKAVTIEDVVAETLAVEAPFEAHTETIVSATDAVEETAPTTKAVVEENVAET
VVAEVTATQAAPETPVVDAPKTVEVAATVVTEAVVHPEGVRFKHHAFAPMTKAPASASTQ
ATQASAHSEWQRPAFDFAGKGSAGAHAAVNKATAPATKPQPVK
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagatggacagcgg
ctttatgatctggatattgaaagtccgggccatgagcaaaaaaaagcgaatatttacaaa
ggtaaaatcacccgaattgagccaagtctggaagctgcttttgttgattacggtgcagaa
agacatggtttccttcctttaaaagaaatctctcgcgagtacttcccaagtaattattcc
tctcatggccgtccaaacatcaaagatgtattgcgcgaaggccaggaagttattgttcag
gttgataaagaagaacgtggtaataaaggcgcagccttaaccacatttatcagtctcgct
ggcagctatttagttctgatgcctaataacccgcgtgccggtggcatttctcgccgcatc
gaaggtgacgaccgtactgaactaaaagaagccctgtcttcactccagttgcctgacggc
atggggctgattgtccgtacggctggcgtaggcaaatctgccgacgcgctgcaatgggac
ttgtcattccgcctgaaacactgggatgcgattaaaaaagccgccgaaggccgccctgct
ccgttcctgattcatcaggaaagcaacgttatcgtgcgtgccttccgcgattacctgcgc
ccggacatcggcgaaatcctgatcgacaatccaaaaattctcgatctggccaaagagcat
attgccgctctgggtcgcccggatttcagcagcaaaatcaaattgtacagcggcgaaatc
ccgttgttcagccactatcagattgaatctcagattgaatctgcgttccagcgcgaagtg
cgtttgccttccggcggttctatcgttatcgataccaccgaagcgttgaccgcgattgat
atcaactccgcacgcgctactcgcggcggcgacatcgaagaaacggctttcaataccaac
ctggaagcggcggacgaaatcgctcgccaattgcgtctgcgtgacctcggcggcctaatc
gttatcgactttatcgatatgacgccggttcgccatcagcgtgaagtagaaaaccgtctg
cgtgacgccgttcgtcaagaccgcgcccgtattcagatcggccggatttctcgcttcggt
ctgctggaaatgtcccgtcagcgccttagcccgtcactgggtgaatccagccaccacgtc
tgcccgcgttgcagcggcaccggcaccgtgcgtgacaatgaatctctgtcgctgtcgatt
cttcgtctgattgaagaagaagcgctgaaagagaatacccatgaagttcacgctatcgtt
ccagtccagattgcctcttatctgctgaatgaaaaacgtgaatcggttaatgccattgag
aagcgtcaaggcggcgtgcgtgcagttatcgtacctaacgaccagatgcaaaccccgcat
tactcggtgctgcgcgtacgtaaaggtgaagaagttccgaccctgagctacctgctgccg
aaactgcatgaagaagagatggctcagccactggaagaagcgccaatggaacgcaaacgt
ccggaacaaccggcgctggcgaccttctctctgccaacggaagtgccaccggaagctgaa
cctgcggcagcggccaaacctgcggtgcagccagcaaaagcagccgtcagtgccgcacag
ccgggtctgtttagtcgcttgattagcggtctgaaaagcctgttcgccgcaccagctgaa
gcggaagtgaaaccggctgtcgtcgaaaaaaccgaaaataccgataatcgtcgtcaagat
cgtcgtaatccgcgccgtcagaacaatggccgcaaagatcgcggtgaccgcacgccgcgt
gaaggtcgcgaaaatacgcgtgaaaacgcgcgtgacaacggcaatcgggatgcaaaccgc
gataatcgtgacatccgtgaaggccgtgaaggccgtgaagatcagcgtcgtaaccgtcgt
tctaaccagcaaaataccgcggttgaagctacggtagaaaatcgcgacaacgacaaagcg
ccacgggaagaacagcaaccgcgtcgtgaacgtggcgatcgtcaacgtcgtcaacgtcag
aatccgcaggaagtgaaagcggctgaagtggttgaaagcgttgtagcggtaaatctggta
gaagaagtccagcctgagcaggaagaacgccaacaggtgatgcagcgtcgtcagcgtcgt
caattgaatcaaaaagtacgtattcaatcggccaatgatgaactgaacccagcggatacc
gccagtgaaaagactcctgttgttaaaatcgccgagcaaaccgcggctccggttgttgca
caggaagaagtgaaactgttagcaccagcagcggatgaagacaacggtaacgatcgttct
gccaataacgagaatggtatgccacgtcgttcacgccgttcaccacgtcacctgcgtgtc
agtggtcaacgtcgtcgtcgctatcgtgacgagcgttatccaacccaatccgctatgcct
ctggccggggcgtttgcctctccggaaatggcgtcaggcaaggtgtttattcgttatccg
gttgcactgccgcaggaacagcaagttgctgagccagcagcggaaaatatcgcagaaaac
ctgaatacccaagcggctgaaacacctgctgtgatcgcagcaccggcagtcaccaccggt
caggcgaattcggttgctgcatcgccagcgattgaacaaaccgtggcggtaccagccgtt
gtcgctgaacctgctgtgattgaagcgcctaaagctgaaaaaccggttgaagcgttcacg
ccagcgcctgcggcttacaaacatcagccaggtggttcatcttcatcagctgctgccgta
ccgggccgcgcgccagttgctgctccagtcgttgaggcgcctgtagtcaaaactgttgca
gttgaaactgctgaagttaaaactgttgaaatggaaactgctggcgttgaaacgacgaaa
gctgaaactccggttaaccagccagcagcgcaagcggttgttcagccagaagtgacggct
caacctgcggttgaagaaatcgcagcgaaagcggtcactatagaagacgttgttgccgaa
accctggctgttgaagcaccgtttgaagctcataccgaaaccattgtcagcgcaactgac
gcagttgaagaaaccgcgccaacaacaaaagctgtggtagaagagaatgtggctgaaacc
gttgttgctgaagtgactgcgacgcaagcagcgccggaaacgccagtagttgatgcaccg
aaaaccgttgaagtggccgctaccgtagtgaccgaagcggttgttcatccggaaggcgtg
cgcttcaaacatcatgcattcgctccgatgaccaaagcaccggcttctgcctcaactcag
gctacgcaagcgtcagctcacagtgaatggcaacgccctgcgttcgactttgcaggtaaa
ggctctgcgggcgcgcacgcggcagtgaacaaggctacggcaccggctaccaagcctcag
ccagtcaagtaa
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