Yersinia entomophaga: PL78_05080
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Entry
PL78_05080 CDS
T09771
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
yeg
Yersinia entomophaga
Brite
KEGG Orthology (KO) [BR:
yeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
yeg03016
]
PL78_05080
Enzymes [BR:
yeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PL78_05080
Transfer RNA biogenesis [BR:
yeg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PL78_05080
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ANI29213
LinkDB
All DBs
Position
complement(1130575..1132509)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHTQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
VATLHTEKDREIAEPESLVEPFLSRFVGKVQRKDDRLSIIPDHPLLRDAIPCRPVRELTH
DFQNGDWAVAEMRRHPLKGDRAFNADLTAFITHADDHFVPWWVTLSRHNLEREAPTMVAA
ELKQDGLEREDLTALNFVTIDSASTEDMDDALHVADKGDGNLLLTIAIADPTSYVDENSE
LDLIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLVCRVTIAEDGTLGDDISF
SVAWVESKAKLVYDEVSDWLENQGDWQPQNAEIAEQIKLLQRVCNARNAWRQKNALVFKD
RPDYRFLLGEKGEVLDIIVEQRRIANRIVEECMITANVCAAIVLRERLGFGIYNVHTGFD
PALVEQAAAVLKTNEVEADPQALLTLPGFCELRRHLDSLPTQFLDSRIRRFQTFAEISIE
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITGQQAEKPQEEITVQLAERRRLNRM
AERDVGDWLYARYLQPSAGTDTRFPAEIIDVTRGGLRIRLLDNGAVAFIPAPFIHAVRDE
MVCSQETGTVQINGEVVYRQSDKIEVVIAEVRMETRNVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcacactcagacccca
cgcgttgaaggcgtggtaaaagggactgagaaaggctttggctttcttgaggtagatggg
cagaaaagttactttatcccaccgccgtatatgaagaaggtcatgcacggcgaccgtata
gtcgccactcttcataccgaaaaagatcgtgaaattgctgagccagagtctctggtcgag
ccttttctctctcgctttgtcggtaaagtgcagagaaaagatgaccgcctgtcgattatt
ccagaccatcctttgctgcgggatgctatcccttgtcgtccggtacgcgagttaacccac
gatttccaaaacggtgattgggccgtagccgaaatgcgccgccatccgctaaaaggcgat
cgcgctttcaacgctgatttaaccgcctttatcactcatgccgacgatcatttcgttccg
tggtgggtcaccctctcccgtcataatctggagcgcgaagcgccaaccatggtggccgca
gaactaaagcaggacggtttggagcgtgaagacttaactgcactgaacttcgttactatc
gacagcgccagcaccgaagatatggacgatgcgctgcatgtggcagacaaaggcgacggc
aatctgttgctgactatcgccattgccgatccgacctcctacgtggacgaaaacagcgag
ctggatctgattgcgcgtaaacgtgctttcaccaactacctaccgggcttcaacatcccg
atgctgccgcgagatctgtccgataacctgtgttctttgcgtccgaatgagcgccgtccg
gtactggtttgtcgggttaccatcgccgaagacggtacgctgggcgatgatatttcattt
tctgtcgcctgggtcgagtctaaagccaagctggtttacgatgaagtgtctgactggctg
gaaaatcaaggtgactggcagccgcagaacgccgaaatcgctgagcaaatcaagctgctg
caacgcgtatgtaacgcgcgtaacgcctggcgtcagaagaatgcgctggtgtttaaagat
cgtccagactaccgcttcctgttgggtgagaaaggcgaagtgctggatatcatcgttgag
caacgccgcattgccaaccgcattgtggaagaatgcatgattaccgccaacgtctgtgct
gccattgtgctgcgcgagcgtctgggctttggaatctataacgttcacaccggttttgac
ccggccctagtcgagcaggcagcggcagtgctgaaaaccaacgaagtggaagccgatcct
caagctctactgacgttaccgggcttctgcgaactgcgtcgccatcttgattcgttgcca
acccagttcctcgatagccgtattcgtcgtttccagacctttgcggaaatcagcatcgag
ccaggcccgcactttggcttaggtttagaggcttacgccacctggacatcgccaattcgt
aaatacggcgatatggttaaccatcggctgctgaaagcggtgattaccggtcaacaggcc
gaaaaaccgcaggaagagattaccgttcaactggccgaacgccgccgcctgaaccgtatg
gccgagcgcgatgtaggtgactggctgtacgcccgttatttacagccaagcgcgggtacc
gatacccgtttcccagcggaaattatcgatgtgactcgcggtggtttacgcattcgttta
ctggataacggcgcggtcgcctttattcctgcgccatttattcacgcggtgcgtgatgag
atggtgtgcagtcaggaaaccggcaccgtacaaatcaacggtgaagtggtttaccgtcag
agcgataaaatcgaggttgtcatcgcggaagtccgtatggaaacccggaatgtgatcgcc
cgcccagccgcctga
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