Yersinia entomophaga: PL78_09975
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Entry
PL78_09975 CDS
T09771
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
yeg
Yersinia entomophaga
Pathway
yeg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
yeg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PL78_09975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yeg03021
]
PL78_09975
Transcription machinery [BR:
yeg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PL78_09975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Sas-6-like_oligomerization
HTH_SUN2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ANI30148
LinkDB
All DBs
Position
2196785..2198626
Genome browser
AA seq
613 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENTNDTDDDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTA
THVGSELSAEEMDDDDDEDEDEDDDSEDDNSIDPELARQKFSDLREQYENARKEIKKNGR
SHASAAAEILKLSEVFKQFRLVPKQFDYLVNNMRTMMDRVRTQERIIMKLCVEQCKMPKK
NFVTLFASNETSDTWFAAAVAMGKPWSEKLKDVAEDVQRSLQKLRQIEEETGLTIEQVKD
INRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTP
EELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESL
RSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgatcag
atcgaagacatcatccagatgattaatgacatgggtatacaggtgctggaagaagcacct
gatgccgatgatttaatgctggccgaaaacaccaatgataccgacgatgatgcggctgaa
gctgctgcacaggtgttgtccagtgtcgaatccgaaattggtcgtacgaccgatccggtc
cgcatgtatatgcgtgaaatgggtaccgttgagcttctgacccgtgaaggcgagattgat
attgccaagcgtatcgaagacggtatcaatcaggtgcaatgttctgttgcagaatatcct
gaagctattacttatctgttagagcaatacgatcgcgttgaagctggcgaagcccgcctg
tccgacctgatcaccggctttgttgacccgaatgccgaagaagatattgcgccaaccgca
acccacgtaggttcagaattgtccgccgaagagatggacgatgatgacgacgaagatgaa
gacgaagacgacgacagcgaagacgataacagcatcgatccggaactggcgcgtcaaaaa
ttcagcgacctgcgcgaacaatacgaaaacgcacggaaagaaatcaagaaaaatggccgt
agccatgccagcgctgccgctgaaattctgaaactttctgaagttttcaaacagttccgc
ctagtgcctaagcagtttgactatctggtcaacaacatgcgcaccatgatggatcgcgtt
cgtactcaagaacgtatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaagaaa
aacttcgtcacgctgtttgccagcaacgaaaccagcgatacctggtttgctgcggctgtc
gcgatgggtaaaccatggtctgaaaaactgaaagacgtagcggaagatgtccaacgtagc
ctgcaaaaactgcgtcagatcgaagaagaaaccggtctgaccatcgagcaagtgaaagat
atcaaccgtcgtatgtctatcggcgaagcgaaagctcgtcgtgcgaagaaagaaatggtc
gaggcgaacttgcgtctggttatttctatcgctaaaaaatacaccaatcgcggcctgcaa
ttccttgatttaattcaggaaggcaacatcggcttgatgaaagcggtagataagtttgaa
taccgtcgtggttataagttctcgacttatgccacttggtggattcgtcaggcaattacc
cgttccatcgcagaccaggcgcgcaccatccgcattccggtgcatatgattgagacaatt
aacaaactcaaccgtatctcccgtcagatgttgcaggaaatgggtcgtgaacctaccccg
gaagaattagcagaacgtatgctgatgccggaagacaagatccgcaaagtgctgaagatc
gcgaaagagccgatctcaatggaaacgccaattggtgatgatgaagattcacatctgggc
gatttcatcgaagatactacgctggagctgccgctggattctgctacctcagagagcctg
cgttccgcaactcacgacgtgttggctggcttgaccgctcgtgaagcgaaagttctgcgt
atgcgttttggtatcgatatgaacactgatcatactttggaagaagttggtaagcagttc
gacgtaacccgtgaacgtattcgtcagatcgaagccaaagcgctgcgtaaactgcgccac
ccaagccgttcagaagttctgcgtagcttccttgacgattaa
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