Yersinia entomophaga: PL78_13120
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Entry
PL78_13120 CDS
T09771
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
yeg
Yersinia entomophaga
Pathway
yeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PL78_13120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yeg03019
]
PL78_13120
03016 Transfer RNA biogenesis [BR:
yeg03016
]
PL78_13120
Enzymes [BR:
yeg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PL78_13120
Messenger RNA biogenesis [BR:
yeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PL78_13120
Transfer RNA biogenesis [BR:
yeg03016
]
Prokaryotic type
tRNA degradation factors
PL78_13120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
aRib
KH_SLS1_2
UPF0181
KH-I_KHDC4-BBP
S1_RRP5
Spt6_S1
DUF4172
Motif
Other DBs
NCBI-ProteinID:
ANI30758
UniProt:
A0ABM6BN66
LinkDB
All DBs
Position
2883594..2885714
Genome browser
AA seq
706 aa
AA seq
DB search
MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPEGFLNEVQVIATVVSV
NPQVNPDIVALIGASAALSLSGIPFNGPIGAARVGFINDQYVLNPTTDELKESRLDLVVA
GTAAAVLMVESEADILSEDQMLGAVVFGHEQQQVVIENINALVAEAGKPKWDWQPEAVNE
ALYARVAELASARLGDAYRITEKQERYTQVDAIKAEVTESLLAADETLDASEIQDILGSV
EKDVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNIDELMGERTDSFLLHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPSPSE
FPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKDEENFVVLSD
ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQEALSQAKGARLHILGVMEQA
ISTPRGDISEFAPRIYTMKINSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTIKIAAT
DGEKAKHAIRRIEEITAEIEVGRIYAGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVMEVDRQGRIRLSIKEATTPDAEAPAPEAAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ttgctgactccgattattcgtaagttccagtacggtcaacataccgtgaccattgaaacc
ggtatgatggctcgccaggcaactgctgccgttatggtaagcatggacgacaccgcagta
ttcgttactgttgttggccagaaaaaagccaagccaggccaaagcttcttcccactgacc
gttaactatcaggagcgtacttacgctgctggtcgtatcccaggcagtttcttccgtcgt
gaaggccgtccaagcgaaggcgaaaccctgacctctcgcctgattgaccgtccgattcgc
cctctgttcccagaaggctttctgaatgaagttcaggttatcgcgaccgttgtttccgtt
aacccacaggttaacccggacatcgttgctctgatcggtgcatctgcggctctgagcctg
tcaggtattccattcaacggcccaatcggtgctgcacgcgttggttttatcaatgaccaa
tacgttctgaacccgacgaccgatgagctgaaagaaagtcgtctggatctggttgttgcc
ggtacagctgccgcagtattgatggttgaatccgaagcagacatcctgagcgaagatcaa
atgctgggcgcagtggtattcggtcacgaacaacaacaggttgtgattgaaaacatcaac
gcactggttgctgaagcgggcaaacctaagtgggattggcagccagaagcggttaacgaa
gcgctgtatgcgcgcgttgctgaattggccagcgcacgtctgggcgatgcataccgtatt
accgagaaacaagagcgttacactcaggttgatgcaatcaaagctgaagtgaccgaatct
ctgctggcggcagacgagactctggatgcttcagaaattcaggacatcctgggcagcgta
gagaaagacgtggttcgtagccgtgttctgcgtggcgagccgcgtatcgatggccgcgaa
aaagacatgatccgtggtctggacgttcgtactggcgtattgccacgtactcacggttca
gcactgttcacccgtggcgaaactcaggcgctggtaaccgcgactctgggtaccgcacgt
gacgcgcaaaatattgatgaactgatgggtgagcgtactgactcattcctgctacactat
aacttccctccttactctgttggtgaaacaggtatggttggttcacctaagcgtcgtgag
attggccatggccgtctggcgaaacgcggtgtgttggccgttatgccaagcccgagcgaa
ttcccctataccattcgtgtggtttctgaaatcaccgaatctaacggttcttcctcaatg
gcttccgtttgtggtgcttctctggccctgatggacgctggcgtgccaatcaaagccgcc
gttgcgggtatcgcaatgggtctggttaaagatgaagaaaactttgtggttctgtccgat
atcttgggtgacgaagatcacttgggcgacatggacttcaaagtagcgggtagccgtgaa
ggtattaccgcgctgcaaatggatattaaaatcgaaggtattacccgcgaaatcatgcag
gaagcactgagccaggccaagggtgcgcgtctgcacattctgggcgtaatggaacaggct
atcagcacaccacgtggtgatatctccgagttcgctccacgtatctacaccatgaagatc
aactctgacaaaatcaaagatgtgatcggtaaaggtggttctgtgattcgtgcgctgacg
gaagaaacaggtactaccatcgaaatcgaagatgatggcaccatcaagattgcagcaact
gacggcgaaaaagcgaaacacgctattcgtcgcatcgaagaaatcactgctgaaatcgaa
gtgggtcgcatctacgctggtaaagtaactcgtatcgttgatttcggtgcgttcgttgct
atcggtggcggtaaagaaggtttggttcatatttctcaaatcgctgacaagcgcgtagag
aaagtgactgattacctgcaaatgggccaggaagtgccagttaaggtaatggaagttgac
cgtcagggtcgtattcgcctgagcatcaaagaagcgactacgcctgatgcagaagctcca
gcgcctgaagcagcagagtaa
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