Yersinia entomophaga: PL78_13130
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Entry
PL78_13130 CDS
T09771
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yeg
Yersinia entomophaga
Pathway
yeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PL78_13130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yeg03019
]
PL78_13130
03009 Ribosome biogenesis [BR:
yeg03009
]
PL78_13130
Enzymes [BR:
yeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PL78_13130
Messenger RNA biogenesis [BR:
yeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PL78_13130
Ribosome biogenesis [BR:
yeg03009
]
Prokaryotic type
rRNA helicases
PL78_13130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_C
DbpA
ResIII
CMS1
DRTGG
Cas3-like_C_2
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
ANI30760
LinkDB
All DBs
Position
2886911..2888866
Genome browser
AA seq
651 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIDPTLKAPQVLVLAPTRELAVQVAEALSSFSKHISGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSNTTRPDISQSYWKVGGGYRKNEALVR
FLESEDFDAAIIFVRTKNATLEVAETLERSGYSSAALNGDMNQSLREQTLERLRDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NIERTMKLTIPEVMLPNAELLGERRLAKFAAKVSQQLESSDLDVYRGLLTKLQPEDEFDI
ETLAAALLKMAQGERPLILPPEPVRRPQREFSPREDRGNDRGDRRERRPESRDGGERPAR
RERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM
PGDMLSHFTRTRILNKPLNMQLLGDAQPHERRERAPGAGAERRGGGRSFGGERREGGNGA
PRRSFGGERREGGNGGERRGNRDAQRPAAAPRRDDAAAPAAAPARRRFGDA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatttggggctgtccgctcctattctttct
gcccttactgatctgggctacgaaaaaccatctccaattcaattggaatgtattccacac
ctgctgaacggccgtgatgttctcggcatggcgcagaccggtagtggtaaaacagctgct
ttcgggcttccgctgttgcacaacattgacccaacgctgaaagcaccacaggtgctggta
ctggctccaactcgtgagctggcagttcaggttgcggaagcattatctagcttctctaaa
catattagcggcgttaacgtggtggccctgtacggcggccagcgttatgacgttcaatta
cgcgctttgcgccaagggccacaagttgttgttggcaccccaggtcgtctgttagaccac
ctgaaacgcggtaccctgaacctgtccaacctgagcggtttagtgttggatgaagcagat
gaaatgctgcgtatgggctttatcgaagacgtagagaccatcatggcgcagatcccggct
gaacatcagaccgctctgttctctgcaactatgccagaagctattcgtcgtattacccgt
cgcttcatgaaagagccacaggaagtacgcattcagtctagcaatactactcgtcctgac
atcagtcagagctactggaaagtcggcggcggttaccgtaaaaacgaagcgttggtgcgt
ttcttggaatctgaagatttcgacgcggcaatcatcttcgtgcgtaccaaaaacgcaacg
ttggaagtggctgaaactctggagcgcagtggctacagcagtgcagcactgaacggcgat
atgaaccagtccctgcgtgagcagactctggaacgtctgcgcgatggtcgtttggatatc
ctgattgcaactgacgtggctgctcgtggcctggacgttgagcgtatcagcctggttgta
aactatgatatccctatggattcagagtcttacgttcaccgtatcggccgtaccggtcgt
gcaggtcgtgcgggccgtgcgttgctgttcgttgagaaccgtgaacgtcgtctgttgcag
aacatcgaacgtacgatgaagctgaccattccagaagtgatgttaccaaatgcagaatta
ctgggcgaacgtcgtctggctaaattcgcggctaaagttagccagcagctggaaagtagc
gatctggacgtataccgtggtctgttgactaaactgcaaccagaagatgagttcgatatc
gaaactctggccgctgcgctgctgaaaatggcacagggcgaacgtcctctgattctgcca
ccagagccagtacgtcgtccgcagcgtgagttcagcccgcgtgaagaccgtggcaacgat
cgtggcgatcgccgtgagcgtcgtccggaaagccgtgacggtggcgagcgtcctgcgcgt
cgcgaacgtcgtgacgttggcgagatggaactgtaccgcattgaagtgggccgtgatgat
ggtgttgaagttcgtcatatcgttggcgctattgctaacgaaggcgacatcagtagccgt
tatatcgggaatatcaagctgttcgcttcccactcaaccattgagctgccaaaaggcatg
ccgggcgatatgctgtctcatttcacccgtactcgtatcctgaacaagccgctgaacatg
cagctgttgggtgatgcgcagcctcacgaacgtcgtgagcgtgctccaggtgctggcgca
gagcgtcgtggcggtggtcgttcattcggcggcgaacgtcgtgaaggcggcaacggtgct
ccacgtcgttcattcggcggtgagcgtcgcgaaggcggcaatggcggcgaacgtcgtggc
aaccgtgacgctcaacgtccagctgccgcaccacgtcgtgatgatgcagccgctccggca
gcagcaccagcccgtcgtcgtttcggtgacgcataa
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