Yersinia entomophaga: PL78_17240
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Entry
PL78_17240 CDS
T09771
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
yeg
Yersinia entomophaga
Pathway
yeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PL78_17240 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yeg03400
]
PL78_17240 (sbcB)
Enzymes [BR:
yeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PL78_17240 (sbcB)
DNA repair and recombination proteins [BR:
yeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PL78_17240 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PL78_17240 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PL78_17240 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
YkoP
Adeno_L433K_22K
Motif
Other DBs
NCBI-ProteinID:
ANI31557
UniProt:
A0ABN4Q241
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All DBs
Position
complement(3856884..3858314)
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AA seq
476 aa
AA seq
DB search
MAKPTSSPTFYVHDYETFGQHPALDRPAQFAGVRTDLDFNIIEEPLVVYCTPADDYLPQP
EAVMITGITPQTALAKGVNEAEFSQRIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQNGNSRWDLLDVMRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHLQAH
DAMSDVHATIAMAKLVKQAQPRLFDYLYQHRNKHKINSLIDIAEMTPLVHVSGMFGAARG
NTSWVAPLAWHPDNKNAVIMCDLAGDMSPLLELDTDALRERLYTRRDQLSANQSSVPIKL
VHINKCPVLAPAKTLLAENAERLGIDRQRCLQNLQLLRQNPQIREKVVALFAEAPPFAAS
NDVDAQLYDGFFSDADRAAMKIIQQTAPQNLPALDLSFQDRRLDELLFRFRARNYPNTLD
DSEQQRWLNHRREVLSPERVQEYVQQLEQFYNLYESDKDKLELLKSLYDYARELVS
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaccaacctcatcaccgacgttttacgtccatgattacgagacttttggtcaa
catccagcgctggatcgtccggcgcagtttgctggtgtgcgaaccgatctggatttcaat
atcatcgaagagccattggtggtgtattgcactccggcggacgattatctgccacagccc
gaggcggtgatgattaccggcattacgccgcaaaccgcgctggccaaaggcgtcaacgag
gctgagttttcccaacggattcatcaggcttttagcgtgcccggaacctgtattttgggt
tacaacaatattcgatttgatgatgaagtcagccgtaatatcttttatcgcaacttctac
gatccttacgcctacagctggcaaaatggtaattctcgttgggatttactggatgttatg
cgcgcatgttatgccttgcgtccggaaggcattatctggccggaaaatgacgacggcctg
ccgagctttaaactggaacatctgaccaaagccaatggcgtagaacatttacaggctcat
gacgcgatgtctgacgtacatgccaccattgcgatggcaaaactggttaagcaggcgcaa
cctcggttgtttgattatctctatcagcatcgtaataagcataaaatcaattcgttaatc
gacattgccgagatgactccgctggtgcacgtttccggcatgtttggtgctgcgcgaggt
aacaccagctgggttgcacctctggcctggcacccggataacaaaaacgccgtcatcatg
tgcgatctggccggagatatgtcgccgctgctggaactggataccgacgccttgcgtgaa
cgcttatatactcgtcgagaccagctttctgccaatcaatcgtctgtgccaatcaaactg
gtgcatatcaataagtgtccagtgctggctccagcgaaaactctgctggcagagaatgcc
gaacgtttaggtatcgatcgccaacgttgcctgcaaaatttgcaattattgcgacaaaac
ccgcagatacgcgaaaaagtagttgccctgtttgctgaagccccgccttttgctgcatcc
aacgatgtggatgcccagctttatgacggcttctttagtgacgccgatcgagcggcaatg
aagattattcagcaaactgcgccgcaaaatctgcctgcgctggatctgagttttcaggat
cgacgtttggatgagttgctgttccgttttcgcgccagaaactaccccaatactctggat
gacagcgagcagcagcgctggcttaaccatcgccgcgaagtgctaagccctgagcgggta
caggagtatgtgcagcaattggagcaattctacaatctgtatgaaagtgataaagataaa
ttggagctattaaaatcattgtacgattatgctcgcgaattagtgagttaa
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