Yersinia enterocolitica LC20: LC20_00005
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Entry
LC20_00005 CDS
T03179
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
yel
Yersinia enterocolitica LC20
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yel03032
]
LC20_00005 (gyrB)
03400 DNA repair and recombination proteins [BR:
yel03400
]
LC20_00005 (gyrB)
Enzymes [BR:
yel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
LC20_00005 (gyrB)
DNA replication proteins [BR:
yel03032
]
Prokaryotic type
DNA Topoisomerases
LC20_00005 (gyrB)
DNA repair and recombination proteins [BR:
yel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LC20_00005 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Toprim_4
DUF6865
Motif
Other DBs
NCBI-ProteinID:
AHM71261
UniProt:
A0A7U4GBT1
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Position
3777..6191
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AA seq
804 aa
AA seq
DB search
MSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIV
VTIHSDNSVSVQDDGRGIPTGMHDEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELVIRREGKVHEQTYRMGVPQSPLKVVGETDQTGTTVRFWPSFQTFTNNT
EFQYEILAKRLRELSFLNSGVSIKLKDKRNDKEDHFHYEGGIKAFVEYLNKNKNPIHPKV
FYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKE
GYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEY
LLENPTDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVKKG
KQEQYIKDDDAMEQYQMTLALDGAALHINADAPPLVGEHLEKLVAEHYSVQKTIARMERR
YPRALLNNLIYQPTLKEEDLSDKEIVTQWIESLVALLNEKEQHGSSYSAVVRENRERQLF
EPVLRIRTHGVDTDYDLDFDFIHGGEYRKICLLGDKLRGLIEADAFVERGERRVPVASFE
DALDWLVKESRRGLAIQRYKGLGEMNPEQLWETTMDPTSRRMLRVMVKDAIAADQLFTTL
MGDAVEPRRAFIEENALRAANIDI
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatacttatgactcctcaagtatcaaggtattaaaagggctggatgcggttcgt
aagcgtccgggcatgtatatcggtgatactgatgacggtaccggtctgcaccacatggta
ttcgaggttgtggacaacgctatcgacgaagccctcgctggccactgtaaagaaattgtg
gtgaccatccattcggataactcagtgtccgtacaggatgatggccgtggtatcccaacc
ggtatgcatgacgaggaaggggtatcggccgctgaggtcatcatgaccgtattgcatgct
ggcggtaaatttgacgataactcttacaaagtttccggtggtttgcacggtgtaggggtg
tctgttgtgaacgccctgtccgaaaaactggaattagtgattcgccgtgaaggtaaagtt
cacgagcagacttaccgaatgggtgtgccgcagtcaccattgaaagtcgtgggtgaaacc
gaccagaccgggactaccgtgcgtttctggccgagcttccagactttcaccaataacacc
gaattccaatatgaaattctggctaaacgtctgcgcgagctgtcgttcctgaactccggg
gtttcaatcaagctgaaagacaaacgtaacgacaaagaagaccacttccattacgaaggc
ggtatcaaagcgtttgttgagtatctgaacaaaaacaaaaacccgatccacccaaaagtg
ttctatttctccaccgtgaaagatgatatcggcgtagaagtggccttgcagtggaacgac
ggtttccaagagaatatttactgtttcaccaacaacattccgcagcgcgatggggggact
cacttggtggggttccgcacggcaatgacccgtaccctgaacagctacatggataaagaa
ggctacagtaaaaaagcaaaaatcagtgccaccggtgatgatgcccgtgagggtttgatt
gccgtggtttcagtgaaagtaccagaccctaaattctcctcacagaccaaagataaattg
gtctcctctgaggtaaaaaccgcggtcgaaacactgatgaatgaaaaactggttgagtat
ttgctggaaaacccaactgacgccaaaatcgtggtcggcaagattattgacgcagcccgt
gctcgtgaagcggcgcgtaaagcgcgtgaaatgacgcgccgtaaaggtgcgttggacttg
gctggtttgccaggcaagttggcagactgtcaggagcgagatccggcattgtctgaactc
tacttagtggaaggggactctgcgggcggctctgctaaacaaggccgtaaccgtaaaaat
caggccattttgccgttgaaaggcaaaatcctgaacgtcgagaaagcgcgctttgacaaa
atgctctcttcacaagaagtggcaacgctgattaccgcattgggttgtggtattggccgg
gatgaatataacccggacaaactgcgctatcacaatatcattattatgaccgatgccgac
gtggatggttctcacatccgcacgttattgttgaccttcttctaccgtcagatgccggaa
attattgagcgtggtcatgtatttatcgctcaaccgccattgtataaagtgaaaaaaggt
aaacaagagcaatacatcaaagatgatgacgcgatggaacagtaccagatgacactggca
ctggatggcgcagctctgcatatcaatgctgatgcaccaccattggtgggtgaacatcta
gagaaactggttgctgagcactacagtgtccagaaaactattgctcgtatggagcggcgt
tacccacgtgctctgctgaataacctgatttatcagccaaccttgaaagaagaggacttg
agcgataaagagattgtgacgcagtggattgagtcgctggtggccttgctgaatgaaaaa
gagcaacacggcagcagctacagcgcagtggtacgtgaaaaccgcgagcgccagttgttc
gagccagtattgcggattcgtactcacggggtggataccgattatgatctggacttcgat
ttcatccatggtggtgaatatcgtaagatctgcctgttgggtgataaactgcgcggctta
attgaagcagatgcttttgttgaacgtggcgagcgccgtgtgccggttgcaagttttgaa
gacgcactggactggttagttaaagagtcccgtcgtggtttggcaatccagcgctataaa
ggtttgggtgaaatgaatccagagcagctgtgggaaaccacgatggacccaacgagccgc
cgtatgctgcgggttatggtgaaagatgccattgccgctgaccagctattcaccactctg
atgggggatgcggttgaacctcgccgtgcctttatcgaagagaatgcactgcgtgcagcg
aatattgatatctaa
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