Yersinia hibernica LC20: LC20_03340
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Entry
LC20_03340 CDS
T03179
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
yel
Yersinia hibernica LC20
Pathway
yel03030
DNA replication
yel03430
Mismatch repair
yel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LC20_03340 (holB)
03430 Mismatch repair
LC20_03340 (holB)
03440 Homologous recombination
LC20_03340 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yel03032
]
LC20_03340 (holB)
03400 DNA repair and recombination proteins [BR:
yel03400
]
LC20_03340 (holB)
Enzymes [BR:
yel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LC20_03340 (holB)
DNA replication proteins [BR:
yel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LC20_03340 (holB)
DNA repair and recombination proteins [BR:
yel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LC20_03340 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
HEAT_2
DUF6587
Motif
Other DBs
NCBI-ProteinID:
AHM74593
UniProt:
A0A7U4K1L5
LinkDB
All DBs
Position
complement(2861803..2862816)
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AA seq
337 aa
AA seq
DB search
MKWYPWLSAPYRQWVGQQIAGRGHHALLLHSLPGNGQEALIYGISRWLMCQQRQGEKSCG
ECHSCRLMLAGNHPDWYMLAAEKGKSSIGVELVRQQIEKLYSHAQLGGAKVVWLPHAELL
TDAAANALLKTLGEPPEKTYFLLNCYQPASLLATLRSRCFYWHLACPDTALSLQWLQRQV
QAEPISMLAALKLSEGAPLAAERLLQPERWAIRAAMCGALSTALHSSDLLSLLAQLNHDD
AAERSQWLSSLVLDALKWQQGAGEFAVNQDQLPLVQQLAQIATTPVLLQSAKQLSHCRHQ
LLTVVGVNRELLLTELLLNWETALSTGAVSTSSSLNT
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggtacccatggctaagtgcgccgtaccgtcagtgggtagggcagcagattgct
gggcgtggccatcatgcattattgctgcactccctgcctggcaatggccaagaagcgctc
atttacggcatcagccgctggctaatgtgccagcagcggcaaggcgagaaaagctgtggc
gaatgccatagttgccgcctgatgttggcaggtaatcaccctgactggtatatgctggca
gcggagaaaggcaaaagcagcatcggtgttgagttagtgcgccaacagattgaaaaactt
tattctcatgctcagcttggcggcgcaaaagtggtgtggttgccccatgccgagttactg
actgatgctgctgccaatgcattactcaaaacgctgggagagccgccggaaaaaacctat
tttttgctcaattgttatcaaccggccagtttgctggcaacattgcgcagccgctgtttt
tactggcacctggcctgcccggatacggcgctcagtctacaatggttacagcggcaagtt
caggcggagcccatttcgatgctggccgcacttaaattaagtgagggagcgccgttggcc
gcagaacggttgctccaacccgagcgctgggcaatcagagccgccatgtgtggcgcgtta
agcactgccctgcacagttcggatttactgtcgttgttagcgcagcttaaccatgatgat
gccgctgagcgcagtcaatggctctcttcgttagtgcttgatgcgctaaaatggcagcaa
ggagccggtgagtttgcggtcaatcaggatcaattaccgctggtgcagcaactggcgcaa
attgccacgacgccggtattacttcagtccgcgaagcaattgagccattgtcgccatcaa
ttattaacagtggtgggggttaatcgtgaattattgctcaccgagctgctgctcaactgg
gaaaccgccctgagcactggggcagtttccacctcatcttcattaaatacctag
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