Yersinia hibernica LC20: LC20_04120
Help
Entry
LC20_04120 CDS
T03179
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
yel
Yersinia hibernica LC20
Pathway
yel00260
Glycine, serine and threonine metabolism
yel00460
Cyanoamino acid metabolism
yel00630
Glyoxylate and dicarboxylate metabolism
yel00670
One carbon pool by folate
yel00680
Methane metabolism
yel01100
Metabolic pathways
yel01110
Biosynthesis of secondary metabolites
yel01120
Microbial metabolism in diverse environments
yel01200
Carbon metabolism
yel01230
Biosynthesis of amino acids
yel01240
Biosynthesis of cofactors
yel04981
Folate transport and metabolism
Module
yel_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
LC20_04120
09102 Energy metabolism
00680 Methane metabolism
LC20_04120
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
LC20_04120
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
LC20_04120
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
LC20_04120
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
LC20_04120
Enzymes [BR:
yel01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
LC20_04120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
AHM75373
UniProt:
A0A7U4GHC9
LinkDB
All DBs
Position
complement(3549820..3551073)
Genome browser
AA seq
417 aa
AA seq
DB search
MLKREMNIADYDADLWRAMEQEVVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP
GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANVAVYSALLQPGDTVLGMN
LAHGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYEDMARQAEIHKPKMIIGGFSAYSGI
VDWAKMREIADSIGAWFFVDMAHVAGLVAAGVYPNPVPHAHIVTTTTHKTLAGPRGGLIL
AKGGDEDLYKKLNSSVFPANQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVS
VFLERGYKVVSGGTDNHLFLLDLVDKNITGKDADAALGRANITVNKNSVPNDPKSPFVTS
GVRIGSPAITRRGFKEEESRELAGWMCDVLDNINDEATIERIKQKVLAICARFPVYA
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttaaagcgtgaaatgaacattgccgattatgatgcagatctatggcgtgcaatggag
caagaagtggtgcgccaggaagagcacatcgagctgattgcctctgagaactacactagc
ccgcgtgttatgcaggcacaaggttctcagttgacgaacaaatatgctgaaggctatccg
ggcaagcgttactacggtggctgtgagtatgtcgacattgtagaacagctggctattgac
cgcgctaaagagttgttcggtgcagattacgccaacgttcagccgcattccggttctcag
gccaacgtggcggtttactcagcgttgctgcaacccggtgatactgttctggggatgaac
ctggcgcacggcggccatttgacccacggctcaccggttaacttctccggtaaactgtac
aatatcgtgccttacggtattgatgagtctggcaaaattgattatgaagatatggcgcgt
caggccgaaattcataaaccaaaaatgatcatcggcggcttctctgcttattccggtatt
gttgattgggcaaaaatgcgcgaaatcgctgatagcatcggcgcatggttctttgtcgat
atggctcacgtagccggtctggtagcggcgggcgtttaccctaaccccgtgccacatgcg
catatcgtgactacgaccacgcacaaaacattggctggcccacgcggcggcttgattttg
gcgaaaggtggcgatgaagatctgtataaaaaactgaactcctctgtgttcccggcgaac
cagggcggcccattgatgcatgtcatcgcgggtaaagcggtcgcgttgaaagaagccatg
gagcctgagtttaaagtttatcagcagcaagtggctaagaatgccaaagccatggtgtcg
gtattcttggaacgtggctacaaagtggtgtctggtggtacagataaccacctgttcttg
cttgatttggttgataaaaatatcaccggtaaagatgccgatgctgcgttgggtcgtgcc
aatattactgtgaacaaaaacagcgtgcctaacgacccgaaaagcccattcgtcacttct
ggtgtgcgtattggtagcccggcgattactcgccgtggtttcaaagaagaagagtcgcgc
gagctggcgggctggatgtgtgatgtgttggataacatcaacgacgaagcgaccatcgag
cgcatcaagcagaaagttttggctatttgcgcccgtttcccggtttacgcataa
DBGET
integrated database retrieval system