Yersinia hibernica LC20: LC20_04152
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Entry
LC20_04152 CDS
T03179
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
yel
Yersinia hibernica LC20
Pathway
yel03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LC20_04152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yel03019
]
LC20_04152
03009 Ribosome biogenesis [BR:
yel03009
]
LC20_04152
03036 Chromosome and associated proteins [BR:
yel03036
]
LC20_04152
Enzymes [BR:
yel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
LC20_04152
Messenger RNA biogenesis [BR:
yel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LC20_04152
Ribosome biogenesis [BR:
yel03009
]
Eukaryotic type
90S particles
RNase
LC20_04152
Prokaryotic type
rRNA processing factors
LC20_04152
Chromosome and associated proteins [BR:
yel03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
LC20_04152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DSRM_2
DND1_DSRM
RM44_endonuclase
Motif
Other DBs
NCBI-ProteinID:
AHM75405
UniProt:
A0A7U4GHD6
LinkDB
All DBs
Position
complement(3581135..3581815)
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AA seq
226 aa
AA seq
DB search
MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNERLEFLGDSILSFVIANELYRRF
PRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGELKSGGFRRESILADTVEALI
GGIFLDSDIHTIERLILDWYRSRLEEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVR
GEAHDQEFTIHCQVSGLNEPVIGTGSSRRKAEQAAAEQALKQLELE
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccatcgtaataaataggctacagcggaagctgggctacacttttcaacagcag
gagctcttgctgcaagcactgactcatcgtagcgccagtagcaaacataatgagcgtttg
gagttcctgggtgactctatattaagtttcgttatcgccaatgagttgtatcgccgtttc
ccacgagttgatgaaggggatatgagccggatgcgagcaacattggtcagaggaaacaca
ctcgccgaaatggcccgtgagtttgacctcggtgaatgtttacgtcttgggccgggtgaa
ttgaaaagtggtggtttccgccgtgaatcaattttggcagatacagtcgaagctttaatt
ggcggtatcttcttagacagcgatattcatacgattgaacggctgattcttgactggtat
cgcagtcgcttagaagaaatcagcccaggtgacaagcagaaagacccaaaaacgcgcctg
caagaatatttacagggccgtcatctgccattaccttcatatctggttgtgcaggttcgt
ggtgaagcacatgatcaggaatttactatccactgccaggtgagtggcttgaatgaaccg
gttatcggtaccggctcaagtcgccgtaaagctgagcaggcggcagcggaacaagcgctg
aaacagttggagcttgaatga
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