Yersinia hibernica LC20: LC20_04542
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Entry
LC20_04542 CDS
T03179
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
yel
Yersinia hibernica LC20
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yel03021
]
LC20_04542
Transcription machinery [BR:
yel03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
LC20_04542
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
Cas3-like_C_2
COG2_N
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHM75795
LinkDB
All DBs
Position
3957618..3960524
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAIDVRMVTLLFPATGENRLYARNDSPITRVMFNPGDT
ITNHEGWQLKVEEVSEENGLITYIGTRLDTEETGVSMREVLLDSKLTFSKPQDRLFAGQI
DRMDRFALRFRARKYQSEQFRLPWSGLRGIRASLIPHQLHIAYEVGQRHAPRVLLADEVG
LGKTIEAGMIIHQQLLSGRAERILIVVPESLQHQWLVEMLRRFNLRFSLFDDSRYSEALL
DSTNPFETEQMVICSLDFVRRNKQRLEQLADASWDLLVVDEAHHLAWSEEAPSREYQVIE
QLAEHIPGVLLLTATPEQLGQQSHFARLRLLDPDRFHDYEEFVNEQQKYRPIADAVTLLL
GGEHLADDKLNLLGELINEQDIEPLLKAANSQSEDSEAARQELVTMLMDRHGTSRILFRN
TRNGVKGFPHRVLHQIKLSLPTQYQTAIKVSGIMGAKKPLEARAKDMLYPEQIYQEFEGE
NATWWNFDPRVEWLLNYLIANRNEKVLVICAQAATALQLEQVLREREAIRAAVFHEGLSL
IERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI
GQNREIQIMVPYLENTAQAILVRWYHEGLDAFEHTCPTGRTIYDSGYQELITYLATPNEQ
EGLDEFIHTCRQQHEGLKLQLEQGRDRLLEMHSNGGEHGQELAQIIADQDNDVNLVSFAL
NLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPQDGCTVTFDREQALSREDAQFVSWE
HPIIRNGLDLILSGDTGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTP
VRMLMDRNGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQQEVHTMLQQAEALVEGQAR
ILIESAKHEADDKLSAELARLEALKAVNPNIRDDEIEALEHNRKMVLENLNQAGWRLDAI
RLVVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgacacagaaagcgaacttggattgggt
actgtcgttgccattgacgtacgcatggtcaccttactgtttcccgcaaccggtgaaaac
cgcctttacgccagaaatgactcgcccatcacccgcgtcatgttcaatccgggtgatacc
atcactaaccacgaaggctggcagctgaaagtggaagaggtatctgaggaaaatgggctg
attacctatatcggcacccgcctagataccgaagaaaccggcgtttccatgcgtgaagtt
ttgctcgatagcaaactgacttttagcaagccgcaggacaggctatttgccggccaaatc
gatcgtatggatcgtttcgccctacgtttccgcgcccgtaaataccaaagcgagcagttc
cgtctgccctggagtggcttgcgcggtatccgtgccagtttgatcccacaccaattacac
atcgcttatgaagtgggccagcgccatgcaccgcgcgtattactggccgatgaagtggga
ttgggtaaaaccatcgaagcaggcatgattatccaccagcagctgctgtctggccgggcc
gagcgcatcctcatcgtggtaccggaaagtctgcaacatcagtggctggtcgaaatgctg
cgccgcttcaatctgcgcttctcgctgtttgatgacagccgctattccgaagcgctactc
gacagcaccaatccatttgaaaccgaacagatggtgatttgctcactggatttcgtacgt
cgcaataagcagcgcctggaacaattggcggatgcatcctgggatctgctggtggtggat
gaagcgcaccatctggcctggagcgaagaggccccgagccgcgaatatcaagttattgag
caactggccgaacatattcccggcgtattgctattgaccgcaacccccgagcaactgggc
cagcaaagtcactttgcccgcttgcgcctactggatcccgaccgcttccacgattacgaa
gagtttgttaatgagcagcaaaaatatcgtccaatcgccgatgcagtcaccttgctgttg
ggcggtgagcacttagctgacgacaaactgaacctgttgggcgagctcattaatgagcag
gatattgagccgctgctgaaagcagccaacagccaaagtgaagatagcgaagctgcgcgt
caagaactggtcacaatgctgatggacaggcatggcaccagccgtattttgtttcgcaat
acacgtaatggcgtgaaaggtttcccgcaccgtgttttgcatcagattaagctgtcatta
ccgacgcaatatcagacagcgattaaagtatccggcattatgggggccaagaagcccctg
gaagcgcgcgccaaagacatgctttacccggagcaaatctatcaagaatttgagggtgaa
aatgccacgtggtggaactttgacccgcgcgttgaatggctgcttaactacctgattgcc
aaccgcaacgaaaaagtgctggttatctgcgcgcaagccgccaccgcattgcagctcgaa
caagtattgcgcgagcgagaagctatccgtgccgccgtgttccatgaaggtttatcgctg
attgaacgtgaccgcgcagcggcctattttgcatctgaagaagatggcgcacaggtgcta
ttgtgttcagaaatcggctctgaggggcgtaacttccaatttgcttgccagttggtaatg
tttgatttgccctttaacccagacttgcttgaacagcgtattggccgcttggaccgtatt
ggccaaaaccgtgaaatccaaatcatggtgccttatctggaaaataccgcgcaggccata
ctggtgcgttggtatcacgaaggtttggatgcttttgaacacacctgcccaaccggtcgc
accatttatgacagtggctatcaggaattaattacctatctggcgacgccgaatgaacag
gaagggttggatgaatttatccacacctgccgccagcagcatgaggggttaaaactccaa
ttagaacagggccgtgaccgcctgctagagatgcactccaatggcggtgagcatgggcaa
gaactggcgcaaatcattgctgaccaagacaatgatgtgaatttagtcagtttcgccctg
aatctgttcgatatcgtggggattaaccaagaagaccgcagcgataatttgattgtgctg
acgccatctgaccatatgctggtacccgatttccctgggctgccgcaggatggttgcaca
gtcacatttgatcgcgaacaggccttatcgcgcgaagatgcccagtttgtcagttgggag
caccccattatccgtaacggcctggaccttatcttgtcaggcgacaccggtagctgcgca
gtttctctgttaaaaaacaaagcattaccggtgggcactctgcttgctgagctggtctat
gtggttgaagcacaggcgccgaagcacctgcaactgactcgttttttacccccgacaccg
gtgcggatgctgatggacagaaatggcaccaatttggcggcgcaggttgaatttgaaagt
tttaatcgccaactgaatgccgtcaatcgccacacctccagcaaactggtcaatgcagtg
cagcaagaagttcataccatgctacaacaagcagaagcattggttgagggacaagcgcgt
atattgattgaatcagccaagcatgaagcggacgataaactgagtgctgaactggcacgt
ctggaagcactgaaagcggttaaccccaatattcgtgatgacgaaatagaggctctggag
cataaccgtaaaatggtgctggaaaatctgaatcaggccggctggcgtttggatgctatc
cgtctggtcgtggtaacacaccagtaa
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