Yersinia hibernica LC20: LC20_04732
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Entry
LC20_04732 CDS
T03179
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yel
Yersinia hibernica LC20
Pathway
yel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC20_04732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yel03019
]
LC20_04732
03009 Ribosome biogenesis [BR:
yel03009
]
LC20_04732
Enzymes [BR:
yel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LC20_04732
Messenger RNA biogenesis [BR:
yel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC20_04732
Ribosome biogenesis [BR:
yel03009
]
Prokaryotic type
rRNA helicases
LC20_04732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHM75985
UniProt:
A0A7U4K2I4
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All DBs
Position
complement(4151047..4153017)
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AA seq
656 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTTLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIDPELKAPQVLVLAPTRELAIQVAEALTSFSKDIKGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLKGLVLDEADEMLRMGFIEDVENILAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQVYWKVGGGYRKNEALVR
FLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NIERTMKLTIPEVMLPNAELLSERRLAKFAAKVSQQLESSDLDMYRALLAKLQPEEEFDI
ETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGSDRGRDRDRGDSRRDNRSDSRD
GGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHST
IELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGGRSFGGE
RRDGAGAPARRSFGSDRAPAGGGERRGNRDGQRSSAPRRDDAAAPAAPARRRFGDA
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatttggggctgtctgctcctattctttct
gccctgacgactttgggttatgaaaaaccatctccaattcaattggaatgcattccgcac
ctgttgaacggtcgcgatgttcttggtatggcgcaaaccggtagcggcaaaaccgctgca
ttcgggcttccgctgttgcacaacattgacccagaactgaaagcaccacaggtgctggta
ttggctccaacccgtgagctggcgattcaggttgctgaagcattaactagcttctctaaa
gatattaaaggcgttaacgttgtagccctgtacggtggccaacgttatgacgttcaatta
cgcgctttgcgccaggggccacaagttgttgttggcaccccaggtcgtctgttagaccac
ctgaaacgcggtacccttaatctgtccaacctgaaaggtttagtgctggacgaagcagat
gaaatgctgcgcatgggctttatcgaagacgtcgaaaatattctggcacagatcccggct
gaacatcagactgcgctgttctctgcgaccatgccagaagccattcgccgtattacccgc
cgctttatgaaggagccgcaggaagtccgcattcaatctagcgtgacgactcgccccgac
attagccaggtttattggaaagtaggcggtggctatcgtaaaaacgaagcactggttcgt
ttcctggaagcagaagatttcgacgcggcaatcattttcgttcgtactaaaaacgccacg
ctggaagttgcagaagccttggagcgtagcggttatagcagcgctgcactgaacggcgac
atgaaccaggcgctgcgtgagcagactctggaacgcctgaaagatggccgtttggatatc
ctgattgccactgacgttgctgctcgtggtttggacgtcgagcgtatcagcctggttgta
aactatgatatccctatggattcagagtcttacgtccaccgtatcggccgtactggtcgt
gccggtcgtgctggccgtgcgttactgtttgttgagaaccgtgaacgccgtctgttgcag
aatattgaacgtacgatgaagctgaccattcctgaagtcatgctgcccaatgcagaattg
ctgagcgagcgccgtttagctaaattcgcggctaaagttagccaacagctggaaagcagt
gatttggatatgtaccgtgcgttgctggctaaactgcaaccagaagaagagtttgatatc
gaaactctggctgctgcactgctgaaaatggcacagggcgaacgtccgctgattctgcca
ccagaagctccgcgtcgtccacagcgtgaattcaattctcgcgatgaccgtggtagcgat
cgtggccgtgaccgtgatcgtggtgacagccgtcgtgacaaccgctctgacagccgtgat
ggtggcgagcgcccagcgcgtcgcgagcgtcgtgatgttggcgaaatggaactgtaccgc
attgaagtgggccgtgatgatggtgttgaagttcgtcatatcgttggcgctatcgctaac
gaaggtgatatcagcagccgttatatcggtaacatcaagctgtttgcttcccactcaact
atcgagctgccaaaaggcatgccgggcgaaatgttatctcacttcacccgtacccgtatc
ctgaacaagccgctgaacatgcagctgttgggtgatgcacagccgcatgaacgccgtgag
cgtccagctggcggtaacggtggtgagcgtcgtggcggtggccgttcattcggtggcgaa
cgtcgtgacggtgctggcgcccctgctcgtcgctcattcggtagcgaccgtgctccagcc
ggtggtggtgagcgtcgtggcaatcgtgatggtcagcgttcatctgcaccacgccgcgat
gatgcagccgcacccgctgcacctgctcgtcgccgtttcggtgatgcataa
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