Yersinia hibernica LC20: LC20_04793
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Entry
LC20_04793 CDS
T03179
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
yel
Yersinia hibernica LC20
Pathway
yel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC20_04793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yel03019
]
LC20_04793
03016 Transfer RNA biogenesis [BR:
yel03016
]
LC20_04793
Enzymes [BR:
yel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LC20_04793
Messenger RNA biogenesis [BR:
yel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LC20_04793
Transfer RNA biogenesis [BR:
yel03016
]
Prokaryotic type
tRNA degradation factors
LC20_04793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
WHD_RNase_R
S1
Rho_RNA_bind
RNase_II_C_S1
TFIIE_beta
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AHM76046
UniProt:
A0A7U4GIE6
LinkDB
All DBs
Position
complement(4208783..4211326)
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AA seq
847 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLSGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGFGFLRVEGSKDDLYLSAEQMKMAIH
GDVVLAQAMGADRKGRREARIVRVLVPKTSQIVGRYFTDAGTGFVVPDDGRLSFDILIPP
DAISGARMGYMVVVELTQRPTRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLKEQVPEEAKKGRVDLRNLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPRTALDDEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQYKPLVPHLLELHAMYKVLDQA
RAERGGIAFETEEAKFIFNAERRIERIESTVRNDAHKLIEECMILANIAAARFVEKHNEP
ALFRVHDRPSDDHISALRSVLSELGLTLGGGLKPEPKDYAVLMDEVADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNVKERWTPT
GGWHSDYEDMLQLGEHCSMTERRADEATRNVADWLKCDFMQDQVGKVFTGIIASVTGFGF
FVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGQVYRLGDTVEIRVEAVHMDERK
IDFALVSSTRKPRGEGKTARDKAKQADGQRTMRDTSSRGSRGSSSNPSRRDGAPAGSGQK
RPRRAKKPANFEPDSAFRPADAAAKLDEKAKAEKKAKAKAKRASAKTKKIAAATKAKRAK
KKTSSGQ
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcttggaacgagaagcagaaaaatatgagtcaccgatccctagc
cgggaattcattttggctcatctcgcgaagcgcgaaacacctgccagtcgtgaagagctg
gcgaatgaacttaatttatctggtgaagaacagctagaggcgctgcgtcgccgcctgcgc
gccatggagcgtgatgggcaattggtcttcacccgccgtcagtgctacgccttgccggag
cgcctggacttattgcgcgggacggttattggccaccgtgatgggtttggttttttacgt
gttgagggcagtaaagacgatctgtatctctccgcggaacagatgaaaatggctatccac
ggtgatgtggttctggcccaagccatgggggctgatcgcaaaggccgccgtgaagcgcgt
attgtgcgggtattagtcccgaaaaccagccagattgtgggccgctattttactgatgcg
ggcacggggtttgtagtgccggatgatggccgcttgagttttgatattctgatcccgcct
gatgctattagcggtgctcggatgggctatatggtggtggttgagttgactcagcgcccc
actcgccggactaaagcggtgggtaagattgttgaagtgctcggtgagaatatgggcacc
agcatggcggtggatattgcactgcgcacccatgaaatcccgcatacctggccgccacaa
gttgaaaagcaagtggctgatctgaaagagcaagtgccagaagaggcgaaaaaaggccgg
gttgatttacgcaatctgcccttggtcactattgatggcgaagatgcccgcgacttcgat
gatgcggtgtattgtgagaaaaaacgtggcggtggctggcgtttgtgggtggcgattgct
gatgttagctattatgtgcgcccacgcacggcgctggatgatgaagcccgcagccgtggt
aactccgtatacttcccatcacaagtggtcccgatgctgccagaggtgctgtccaacggc
ctttgttcgctgaatccgcaggtcgaccgcctgtgtatggtgtgtgagatgaccatctcg
gcgcagggcaaattgtcatcgtataagttctacgaagccgtgatgagctcccatgcgcgc
ctgacttacactaaagtgtggcgcattattgatggcgaagaatcattacgtgagcaatat
aaaccgctggtgccgcatctgttagagctccacgcgatgtacaaagtgctggatcaagcg
cgtgccgagcgcggtggtattgcgtttgaaaccgaagaagccaagtttatctttaacgcc
gaacggcgcattgaacgcattgaatcgacagtgcgtaatgatgcgcataagttaattgaa
gaatgcatgattttggcgaatattgccgccgcgcgctttgtggaaaaacacaacgaaccg
gcgctgttccgtgtgcatgaccgcccaagtgatgaccatatctcagcactgcgcagtgta
ctcagtgaattgggtctgacactcggcggtggtttgaaaccggaacccaaagattacgcg
gtgttgatggatgaagtcgccgatcgccctgaccatgaaatgctgcaaacgatgttactg
cgctcaatgaaacaagcggtttatgatccggagaatcgtggtcactttggtttggcattg
gcatcttatggccacttcacttcgccaatccgccgttaccccgatttggccatgcaccgg
gctatcaagtaccagctagccaaagagcacggcaatgtgaaagagcgctggacaccaaca
ggtggctggcacagtgattatgaagatatgttgcaattgggcgaacattgctcaatgacc
gaacgtcgcgctgatgaagccacacgtaatgtggccgactggctgaagtgtgacttcatg
caggatcaggtgggcaaagtgtttaccggcattattgccagtgtcaccgggtttggcttc
tttgtgcgcttggatgacttgttcattgatggtctggtgcatgtctctagcctggacaat
gactattaccgctatgacaatatcggccagcgcttaattggtgagtcttcaggtcaggtt
taccgcttgggcgataccgtggagatccgtgtggaagcggtgcatatggacgagcgcaaa
atcgattttgctctggtctccagtacgcgtaagccgcgcggtgagggtaaaaccgcccgt
gataaagccaagcaagctgatggtcagcgcactatgcgcgatacctctagccgtggtagt
cgtggcagctcttcgaacccatcacgccgtgatggcgcgccagcgggcagtgggcagaaa
cggccgcgtcgtgctaaaaagccggctaattttgagccggatagtgccttccgcccggcc
gatgctgccgctaagctagatgagaaagcgaaagccgagaaaaaagccaaagctaaggcg
aaaagagcctcggccaaaaccaagaaaattgccgccgccaccaaggcgaagcgggccaag
aaaaaaaccagcagcggccagtaa
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