Yersinia hibernica LC20: LC20_04941
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Entry
LC20_04941 CDS
T03179
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
yel
Yersinia hibernica LC20
Pathway
yel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LC20_04941 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yel03021
]
LC20_04941 (rpoC)
03400 DNA repair and recombination proteins [BR:
yel03400
]
LC20_04941 (rpoC)
Enzymes [BR:
yel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LC20_04941 (rpoC)
Transcription machinery [BR:
yel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LC20_04941 (rpoC)
DNA repair and recombination proteins [BR:
yel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LC20_04941 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AHM76193
UniProt:
A0A7U4GIN9
LinkDB
All DBs
Position
complement(4340912..4345132)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEILREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEEIRNTEGESTSRTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPDAKAGIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVL
GRVTAEEVIKPGSADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNAKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVQGGETVANW
DPHIMPVVTEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKALGEAPV
VPQVSVDEATANLAELLNAGFGNSKD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtcgttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttggcccagtaaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgcggtgttatttgtgagaaatgcggcgttgaagtgacgcaaaccaaagtacgccgtgag
cgtatgggtcacatcgagctggcttctccgactgcgcacatctggttcctgaaatcgctg
ccatcgcgcatcggtttgctgctggatatgccattacgtgacatcgaacgtgtactgtac
ttcgaatcctatgtggtggttgaaggcggtatgaccaacttggaacgtcgccagatcctg
actgaagagcagtatctggacgcgttggaagagtttggtgatgagttcgacgcgaaaatg
ggcgccgaggctattcaggctctgttgaaaaacatggatctggaagctgagtgcgagatc
ctgcgtgaagaattgaacgaaacaaattctgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggcaacaagccagagtggatgatcctgacc
gtgttgcctgtgttgccgccagatctgcgtccattggtaccgttggatggtggtcgcttt
gcgacttcagatctgaacgatttgtatcgtcgcgtgattaaccgtaacaaccgtctgaag
cgcctgctggatttggctgcaccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gaagcagtagacgcattgctggataacggccgtcgcggtcgtgcaattaccggctctaac
aagcgtccgttgaagtcactggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgctgggtaaacgtgttgactactcaggccgttcggttatcaccgtgggtccatac
ctgcgtctgcatcagtgcggtctaccgaagaaaatggcccttgagctgttcaagccgttc
atctatggcaagctggaattgcgtggtcttgcgaccaccattaaagcggccaagaagatg
gttgagcgtgaggaagcggtggtttgggatatcctggatgaagttatccgcgaacaccca
gtgctgttgaaccgtgcgccaacccttcaccgtttgggtatccaggcgtttgaaccggtg
ctgatcgaaggtaaagctatccagttacacccactggtttgtgcggcttataacgccgac
ttcgatggtgaccaaatggctgttcacgtaccgctgacactggaagctcagttagaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtcaccagcgaacggcgagccaatcatc
gttccttctcaggacgtggtattgggtctgtattacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtactgactggcccgaaagaagccgagcgtatttatcgcgctggc
ctggcatctctgcatgcccgagtcaaagtccgtattactgaagagattcgtaataccgaa
ggcgaaagcacttcgcgtaccagcatcatcgatacgactattggccgtgccattttgtgg
atgattgtcccgaaaggcctgccttactctatcgttaaccagccgctgggcaaaaaagct
atctccaagatgctgaacacttgttaccgcatcctgggcttgaaaccaacggttatcttt
gctgaccagatcatgtacaccggttttgcttacgcagcacgctcaggcgcctctgtaggt
atcgatgacatggttatcccagatgcgaaagcagggatcatcgaagaagctgaaactgaa
gttgccgagatccaggaacagttccaatccggtctggtaaccgcaggtgagcgttataac
aaagtgatcgatatctgggccgcggctaacgaacgtgttgccaaggcgatgatggataac
ttgtctgttgaagatgttgtcaaccgtgacggcgttgtcgagcagcaagtgtcattcaac
agcatctttatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gctgggatgcgtggcttgatggctaagccagatggttcgatcattgaaacgccaatcact
gcgaacttccgtgaaggtttgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtttggcggataccgcattgaaaacggcgaactccggttacctgacccgtcgttta
gttgacgtggcacaggatctggtggtgactgaggacgattgtggtacccataacggtatc
gtgatgaccccggttatcgaaggtggtgatgttaaagagccactgcgtgaccgcgtgctg
ggtcgtgtgactgcagaagaagttatcaagccgggctcggctgatattctggttccgcgt
aacaccctgctggacgaaaaatggtgtgatctgttagaagagaactccgtcgacagcgtt
aaagttcgctcagtagtaagctgtgaaactgatttcggtgtgtgtgctaactgctatggt
cgcgacctagcacgtggccacatcatcaacaaaggtgaagcagtgggtgttattgcagca
cagtccatcggtgagccgggtacccagcttacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatctagcatccaggttaagaacaaaggtagcttgaaactg
agcaacgccaagttcgtgaccaatgcagcgggcaagctggtgattacttctcgtaacact
gagctgaagcttatcgacgaattcggtcgtaccaaagaaagctacaaagtgccttacggt
gcggtaatgggcaaaggcgacggtgcagaagttcagggcggcgaaactgttgctaactgg
gatccgcacatcatgccagttgtcactgaagtgagcggtttcattcgcttcgcggacatg
gttgacggccagaccattactcgccagaccgacgaactaactggtttgtcttctctggta
gttctggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgctaaaggcgacgatgtattgatcccaggtacagatatgcctgctcaatacttc
ctgccaggtaaagcgattgttcagctggaagacggcattcagattggtgcgggtgatacc
ttggcgcgtattccgcaggaatccagcggtaccaaggatattaccggtggtctgccacgt
gttgctgacttgttcgaagcacgtcgtccgaaagagccggcaatcttggctgaaatcagc
gggatcatctcgttcggtaaagagaccaaaggcaagcgccgtctggttatctcgccgttg
gatggcagcgatgcatacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaaattgtagaacgcggtgacgtggtttccgatggcccagaatctccacacgacatt
ctgcgtctgcgtggcgttcacgcggtgacccgttacatcaccaacgaagtgcaggaagtt
taccgcttgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaaggcaccatcgttgatgcaggtagcaccgacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgcaagctggcagcagaaggcaaaatcgaagcc
acgttcactcgtgacttactgggtatcaccaaggcatccttggcgaccgagtccttcatc
tctgcggcttcgttccaggaaaccacgcgcgttcttactgaagcggcggttgccggtaaa
cgtgatgaactgcgtggcctgaaagagaacgtcatcgtgggccgtctgatcccagccggt
accggttatgcttatcatcaggaccgtatgcgccgtaaagcactgggcgaagctccagtg
gttccgcaagtgagtgtggacgaagcgacggctaacctggctgaattgcttaacgctggt
tttggtaacagcaaagactaa
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integrated database retrieval system
