Yersinia hibernica LC20: LC20_05037
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Entry
LC20_05037 CDS
T03179
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
yel
Yersinia hibernica LC20
Pathway
yel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC20_05037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yel03019
]
LC20_05037
03400 DNA repair and recombination proteins [BR:
yel03400
]
LC20_05037
Enzymes [BR:
yel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC20_05037
Messenger RNA biogenesis [BR:
yel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC20_05037
DNA repair and recombination proteins [BR:
yel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LC20_05037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Peptidase_S66
zf-CXXC
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AHM76288
UniProt:
A0A7U4GIQ9
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Position
complement(4437116..4438948)
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AA seq
610 aa
AA seq
DB search
MSTAAVINRELLAEQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIP
ALVTDGLTLVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQIKLLY
IAPERLVMESFLDQLHQWRPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIAL
TATADEATRGDIVRLLNLDKPLIQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQ
QDIERHKLNAMGAFAQAQTCRRLVLLNYFGEGKQQSCGNCDICLDPPKRYDGLADAQKAL
SCVYRVGQRFGLGYIVEVLRGANNQRIRELGHDKLSVYGIGREQSHEHWVSVLRQLIHLG
LLSQNIALFSALQLTEAARPVLRAELPLQLAVPRIQSLKERSSANQKSYGGNYDRKLFAK
LRKLRKSIADEGNIPPYVVFNDATLLEMAEQMPITASELLSVNGVGQRKLERFGAPFMAM
IRDHVDNNDD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaccgcagcagtgataaatcgggagttactggcagagcaggtattgcgcgatact
ttcggctaccagcaattccggcccggacaacaagaaattatcaatgccaccttatcaggg
caagactgtttggtcgtgatgccaacgggtgggggtaaatccttgtgttatcagattccg
gccctggtgacggatggtttaacactggtggtctcccccttaatctctctaatgaaagac
caagtcgaccaactgctggcctatggcgtgggggcggggtgcttgaactcgtcgcaaaca
cgcgagcagcaattggcggtgatggatgggtgccgcagcggccagattaaactgctgtat
atcgccccagaacggctggtcatggagagctttcttgaccaactgcatcagtggcggcca
gcgctattggctgtggatgaggcgcattgcatctcccaatggggccatgatttccgcccg
gaatatcgagcccttggccagctaaagcaacgttttcccaatttaccggtcattgcactg
accgccacggcggatgaagcgacgcgcggtgatatcgtgcgcttgctcaatctggacaag
cccttgattcaggtcagcagctttgaccgccccaatattcgctacaccttggtcgagaaa
ttcaaaccgcttgatcaactgtggcgttttgttcaagaccagcgcggcaagagtggcatt
atttactgcaatagccgggcaaaagtggaagacaccaccgcccgtttgcaaagccgtggc
ttgagtgtcgcggcctaccatgccgggctggacaatgagcggcgcgcacaggtgcaagaa
gcctttcagcgcgatgatttgcaagtggtggtcgccaccgtggcattcggcatggggatt
aacaaacccaacgtgcgctttgtggtgcactttgacatcccgcgcactatcgagtcttac
tatcaggaaaccggccgtgctgggcgtgatggcttacccgcggaggccatgttgctgtat
gacccggccgatatggcgtggctgcgccgctgtctggaagagaaaccggcaggcgcacag
caagatattgagcggcataaactcaatgcgatgggcgcttttgcacaagcgcaaacttgc
cgtcgattggttttgctgaactattttggtgagggcaaacagcaatcttgtggtaactgc
gatatctgccttgatccgcccaagcgctacgatgggctggcggatgcacaaaaagcactg
tcgtgtgtgtatcgagtcgggcagcgctttggtctggggtatatcgtcgaggtgctgcgt
ggggctaataatcagcgcattcgtgaattgggccatgacaagttatccgtgtatggcatt
ggtcgcgagcaaagtcatgagcactgggtcagtgtgttgcgccaactgattcaccttgga
ttattgagtcaaaatattgccctgttttccgccttgcaattgacggaagcggcacgcccg
gtattgcgcgctgaattgccattgcagttggcggtgccgcgtattcagagcttgaaagag
cgcagcagcgccaatcaaaaatcctatggtggcaattacgaccgcaagttgttcgccaaa
ttacgcaagctgcgcaaatctattgctgatgagggcaatattccaccttatgtggtgttt
aacgatgccactttgctggagatggctgagcaaatgccaatcaccgccagcgaactattg
agtgtcaatggcgtggggcaacgtaaactggagcgctttggcgcgccgtttatggcgatg
atccgcgaccacgtagataataatgacgactaa
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