Yersinia hibernica LC20: LC20_05250
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Entry
LC20_05250 CDS
T03179
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
yel
Yersinia hibernica LC20
Pathway
yel03030
DNA replication
yel03410
Base excision repair
yel03420
Nucleotide excision repair
yel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LC20_05250
03410 Base excision repair
LC20_05250
03420 Nucleotide excision repair
LC20_05250
03440 Homologous recombination
LC20_05250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yel03032
]
LC20_05250
03400 DNA repair and recombination proteins [BR:
yel03400
]
LC20_05250
Enzymes [BR:
yel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LC20_05250
DNA replication proteins [BR:
yel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LC20_05250
DNA repair and recombination proteins [BR:
yel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LC20_05250
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC20_05250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
Obc1_cap
Prok-E2_E
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AHM76501
UniProt:
A0A7U4GJ17
LinkDB
All DBs
Position
complement(4655170..4657962)
Genome browser
AA seq
930 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLTVSGVEADDVIGT
LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKIATLSFRGAKTMSAKLEQNK
DVAYLSYKLATIKTDVELDVTCDELKVSAPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK
KDRPMAQTNNKSFAAVEPAAEVMAVLSQDNYQTILDDVTLNAWIERLKKAEVFAFDTETD
GLDTLSSNLIGLSFAVAPGEAAYLPLAHDYLDAPVQLDRDWVLAQLKPLLEDDKALKVGQ
NLKFDQSMLARYGIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGK
GKNQLTFNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSR
IERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPIL
KKTPGGAASTNEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSY
HQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPAGYRIMAADYSQIELRIMAHLSQ
DKGLLAAFAAGKDIHRATAAEVFGLPLENVTNEQRRSAKAINFGLIYGMSAFGLARQLNI
PRGEAQRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANRRKAA
EREAINAPMQGTAADIIKRAMIAVDTWLQQEPEPLVRVIMQVHDELVFEVHESALESAEQ
KIRELMEQSMQLAVPLKVDVGVGYNWDQAH
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattgcagaaaacccattgatccttgttgacggttcctcttacctctatcgt
gcataccatgccttcccaccgttaaccaacggcagcggtgagccaacgggggcaatgtat
ggcgtgttgaacatgttgcgcagtctgttgttgcaatatcggccaagccatgtggccgtc
gtttttgatgccaaaggtaaaacattccgtgatgagcttttcgcggaatataagtctcac
cgcccgccgatgccagatgatttacgcgcccaaattgagccgctgcaccagatggttaag
gcgatggggttgcctttattgacggtttccggtgttgaggctgatgatgttatcggtact
ttggcacaagaagcggaaaaggcgggtcatgcagtattaattagtactggtgataaagac
atggcgcaattagttacgccaaatatcactcttattaatacaatgaataatgctatttta
gggccacaggaagtgtgcgaaaaatatggcgttccccccgagctgattattgattttctc
gcgttaatgggggattcctcagataatattccgggcgtaccgggggttggcgagaagacg
gcgcaggctttattgcaaggtttgggcggattggatgcgctatttagtaatttggataaa
attgccacgctaagcttccgcggtgccaaaacaatgtctgccaaattagagcagaataaa
gatgttgcctacctctcctataaactcgccacgattaaaacggatgttgagctggatgtt
acttgtgatgaactgaaagtctcagcaccggatgatgagcagctgcatcaattattcagt
cgttatgaatttaagcgctggctggcggatgtcgaagctggcaaatggctggatggtaaa
aaagaccggccaatggcgcagacgaataataaatcttttgccgccgtagaaccggcagcg
gaagtcatggctgtattatcacaagataattatcaaactatcttggatgacgtcacttta
aacgcgtggattgagcggcttaaaaaagcggaagttttcgcttttgatactgaaactgac
ggccttgatacgctcagcagcaatttaatcggcctctcttttgctgtagcgccgggtgaa
gctgcttatttaccattagcgcatgattatctggatgcacctgtacagctcgatagggat
tgggttttggcccagcttaaacccttactggaagatgataaggccctaaaagttgggcag
aatcttaagtttgaccaaagcatgctggcgcgttacggcattgaactgcgcggtattgct
ttcgataccatgctggaatcttatgttttagacagtgtagccggtcgacacgatatggat
agcttggccgagcgctatctcaatcataaaaccattacttttgaagagatcgccggtaaa
ggtaaaaaccagctgactttcaaccaaattgcgttggaacaagctggcccttatgcggcg
gaagacgcggacgtcaccttacaattgcatttggtgctgtggccgaaactacagcaaagt
gaaggcctaaagcgggttttccaagaaattgagatgcctttactgccgattttgtctcgc
attgagcgcactggggtgctgattgaccagaatatattggcggcccattccaaagaactg
actattcgccttgatgagttggaaaaacaggcgcatgaattggcggaggagccatttaat
ctcgcctcacctaagcaattacaggttattttgtatgaaaaacaaaaattgcctattttg
aagaaaaccccaggcggtgccgcttcaaccaatgaagaggtgctggcagagttggcgttg
gattaccctttgccgaaagtcattcttgaatatcgtggcttggccaagctgaaaagcact
tataccgataaattgccgttgatgattaatcctgtttctgggcgagttcacacttcttat
catcaggccgtcacggcgaccgggcgtttatcttcccgagatcctaacctgcaaaatatt
ccggtgcgaaatgaagaagggcgtcgtatacgccaggcttttattgcgcctgcaggttat
cgcattatggcggcggactattcacagattgagctgcgcattatggcccatttatcgcag
gataaagggctgttggctgcatttgccgccggcaaggatatccaccgcgccacagcggca
gaagtctttggtttgcctctggaaaacgtcacgaatgaacagcgccgcagtgctaaggcg
attaactttggtttgatttatggcatgagcgcatttggtttagcgcgacaattgaatatt
ccgcgcggggaagcacagcgctatatggatctctactttgagcgctaccctggcgtgctg
gaatatatggagcgcacacgtaagcaagccgctgatcaaggttatgtcaccaccctagat
ggccgtcgcctctatctgccagacattcactcacggaatgcaaatcgccgtaaggctgct
gaacgcgaggccatcaatgcgccgatgcaagggactgcggctgatattattaagcgcgca
atgattgcagtagacacgtggttacagcaagaacctgagcctttggtgcgggtaatcatg
caggtacatgatgaattggtatttgaagtgcatgaaagtgcattagaaagtgccgagcag
aaaattcgcgagctgatggaacaaagtatgcaattggccgtgccattaaaggttgatgtc
ggtgtgggttataactgggatcaagctcattag
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